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berkeley_reactor_200306_planktonic_scaffold_164454

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Displaying items 151-180 of 191 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_164454_146
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(151883..154045)
DNA (2163bp) protein (721aa)
ABC transporter ATP-binding protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JP99_9BACT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ELR69207.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
xenobiotic-transporting ATPase
berkeley_reactor_200306_planktonic_scaffold_164454_147
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(155165..156394)
DNA (1230bp) protein (410aa)
Lanthionine synthetase C family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRP3_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:EZH75959.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
lanthionine synthetase C family protein
berkeley_reactor_200306_planktonic_scaffold_164454_148
unknown

Not on your lists

comp(156364..157509)
DNA (1146bp) protein (382aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_149
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(157973..161080)
DNA (3108bp) protein (1036aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00037DE60A
Contig34, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77424.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
lantibiotic dehydratase
berkeley_reactor_200306_planktonic_scaffold_164454_150
unknown

Not on your lists

comp(161097..162086)
DNA (990bp) protein (330aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_151
Elizabethkingia sp. BM10, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(162083..163309)
DNA (1227bp) protein (409aa)
Lanthionine synthetase C family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRP3_CHIPD
nisC; Nisin biosynthesis protein NisC
Nisin biosynthesis protein NisC {ECO:0000313|EMBL:AJW63515.1}; TaxID=722877 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia sp. BM10.;"
berkeley_reactor_200306_planktonic_scaffold_164454_152
unknown

Not on your lists

comp(163756..163998)
DNA (243bp) protein (81aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_153
unknown

Not on your lists

164493..164753
DNA (261bp) protein (87aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_154
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

164829..166220
DNA (1392bp) protein (464aa)
Peptidase S41 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT71_CHIPD
peptidase S41
Peptidase S41 {ECO:0000313|EMBL:ACU60861.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_155
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

166207..167235
DNA (1029bp) protein (343aa)
Signal transduction histidine kinase, LytS n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT72_CHIPD
signal transduction histidine kinase LytS
Signal transduction histidine kinase, LytS {ECO:0000313|EMBL:ACU60862.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_156
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

167251..167979
DNA (729bp) protein (243aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT73_CHIPD
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ACU60863.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_157
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(168049..169086)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W6Y2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIX21405.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
uncharacterized protein
berkeley_reactor_200306_planktonic_scaffold_164454_158
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(169135..170106)
DNA (972bp) protein (324aa)
RimK domain protein ATP-grasp n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C5Z5_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:KIX21406.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
RimK domain-containing protein ATP-grasp
berkeley_reactor_200306_planktonic_scaffold_164454_159
unknown

Not on your lists

comp(170189..170527)
DNA (339bp) protein (113aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_164454_160
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(170663..173821)
DNA (3159bp) protein (1053aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00037DE60A
Contig34, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77424.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
lantibiotic dehydratase
berkeley_reactor_200306_planktonic_scaffold_164454_161
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

comp(174196..175398)
DNA (1203bp) protein (401aa)
Lanthionine synthetase C family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRP3_CHIPD
lanthionine synthetase C family protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
berkeley_reactor_200306_planktonic_scaffold_164454_162
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(175804..176070)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CA28_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ78454.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_164454_163
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

176300..176719
DNA (420bp) protein (140aa)
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
berkeley_reactor_200306_planktonic_scaffold_164454_164
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

176731..177330
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KLP5_SOLCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD09199.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_164454_165
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(177348..178565)
DNA (1218bp) protein (406aa)
Chromate transporter, chromate ion transporter (CHR) family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLF4_CHIPD
chromate transporter
Chromate transporter, chromate ion transporter (CHR) family {ECO:0000313|EMBL:ACU58498.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_166
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(178620..179459)
DNA (840bp) protein (280aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KQA2_SOLCM
Zn-dependent hydrolase
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:AFD06397.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_164454_167
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(179616..181271)
DNA (1656bp) protein (552aa)
Cell division protein FtsZ n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRE4_CHIPD
cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_168
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(181374..182816)
DNA (1443bp) protein (481aa)
Cell division protein ftsA n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRE3_CHIPD
cell division protein FtsA
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_164454_169
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(182833..183960)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003755564
Uncharacterized protein {ECO:0000313|EMBL:KIC92790.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_164454_170
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(184020..185378)
DNA (1359bp) protein (453aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRE1_CHIPD
murC; UDP-N-acetylmuramate--L-alanine ligase
berkeley_reactor_200306_planktonic_scaffold_164454_171
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(185421..186512)
DNA (1092bp) protein (364aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCT3_NIAKG
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
berkeley_reactor_200306_planktonic_scaffold_164454_172
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(186547..187719)
DNA (1173bp) protein (391aa)
Cell cycle protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCT2_NIAKG
Cell division protein FtsW {ECO:0000313|EMBL:KIC92793.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
cell cycle protein
berkeley_reactor_200306_planktonic_scaffold_164454_173
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(187745..189103)
DNA (1359bp) protein (453aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003672A45
UDP-N-acetylmuramoylalanine--D-glutamate ligase
berkeley_reactor_200306_planktonic_scaffold_164454_174
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(189110..190381)
DNA (1272bp) protein (424aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRD7_CHIPD
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase
berkeley_reactor_200306_planktonic_scaffold_164454_175
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(190415..191878)
DNA (1464bp) protein (488aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCS9_NIAKG
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
Displaying items 151-180 of 191 in total

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