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berkeley_reactor_200306_planktonic_scaffold_176984_108

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(130280..131905)

Top 3 Functional Annotations

Value Algorithm Source
Rhs element Vgr protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NNZ3_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 58.3
  • Coverage: 545.0
  • Bit_score: 658
  • Evalue 3.60e-186
type IV secretion protein Rhs similarity KEGG
DB: KEGG
  • Identity: 58.3
  • Coverage: 545.0
  • Bit_score: 658
  • Evalue 1.00e-186
Type IV secretion protein Rhs {ECO:0000313|EMBL:AHF15148.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.3
  • Coverage: 545.0
  • Bit_score: 658
  • Evalue 5.00e-186

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Taxonomy

Niabella soli → Niabella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1626
ATGAGCTTAACCAGTTTCCCGCCGGGCAGCGCAGCGCCCACCGATGTTGTCAGTCAGAAAGTATGGATCAACGGCGCTGTACTCAGCAATGAAATATTGCTGAGCCAGTTTACCATACAAAAAATGTTCAACAAGATCGCCTCGTCCCGCCTGGTCTTTGTCGACGGATCCGTTGCCGAGCGCGATTTTGCGCTGAGCGGCGGCGACCTCTTCAAACCGGGCAACGAGATCCGTATCGGCCTGGGGTACGACGGCGATGTGACACCCGTGTTTGAAGGTATTATTGTAAAACACAGCATTAAAGTAGGGCAGGGCGGCAGCACCCTGCTGATGGTCGAAGCCAAGGACAAAGCCATAAAGCTGACCGGCGCGCGGAAGAGCGCTTATTTCAGCGAGAAAACGGATAGCGATATCCTGTCGGAACTCGCTTCCGGTGCGGGTTTGCAAACCGACATAACGGCAACCTCTTTTTCGCATAAGCAAATGGTACAGTTCGATACCACCGACTGGGATTTTATGCTTACGCGTGCCGAAGCCAACAGCATGCTGGTACTGACCGACGATGGCAAGATCGTGGTTGGTAAACCCGCAACAGCAGGCCCCGCGGTACTTACCGCTTTATTTGGCAGTAATATCATGGAGTTTGAAGCGGAGATGGACGCCCGGCGGCAATTCAAAAGCGTAAAAGCCGATAGCTGGAGTCCGGTCAACCTGGAACTGGATGAGTCGTCGGATGGTACCGCTGTATTTACCGAACCGGGTAATATCAGCTCTTCCGAACTGGCCGATATACTGGGCGCAGAAATACAGCTGTCGCATACCGGCAACCTGAGTCAGCAACAGTTGCAGGACTGGGCCGACGCTTATGCCCTGCGTAGTAAACTGTCGAAGGCGGTAGGCCGTGTACGGATACAAGGCAGTGCCGATGCCAAACCCGGTGTGATGCTTACCTTATCCGGCGTAGGCGATCGCTTCAATGGCGATGTGCTGGTAACCGGTGTACTGCATCATTTCGATGGCAACTGGACTAGCGATGTCCAGTTTGGCTGGGCCGACGACTGGTTTTATAAAAAGGATGATGTGACCAACAAACCCGCTGCTGGCCTGCTTCCCGGTATTCATGGCCTGCAGGTAGGCACGGTGGTCGATACGGCCGATCCGGAAGGTAACTACCGCCTTAAAGTACATGTACCTACCATTAGCGGTGGCGGCGATGGCTTCTGGGCAAGGGTTATAAGCCCGGATGCCGGCCAGGACCGGGGCCTGTACTTCAGGCCGCAAACCGGCGACGAAGTGATCCTCGGTTTCCTGAACGACGATCCCCGCGAACCCATCGTGCTGGGTTGTATGCACAGCAAGGACAAGAAGGCCCTGCCTTTCCGCGAAAACGAAGAGTTTGGCGTTATTACCAAAGAAAAGGTAAAAGTGCTGCTCGACGATACCAATAAGAAGCTTACCCTGAGCGTCACCACCGGGTCGGGCGATAAGACCATCATCCTGAACGACTCGGGCGCTATGGAGCTGAAGGATGAGTATGGTAATAGTATCAAGATGGAACAATCGGGTATTACGATCCAGGCCAGCGCCAATGTAACCATTAAAGGCGCCCAGGTACTCATCAACTGA
PROTEIN sequence
Length: 542
MSLTSFPPGSAAPTDVVSQKVWINGAVLSNEILLSQFTIQKMFNKIASSRLVFVDGSVAERDFALSGGDLFKPGNEIRIGLGYDGDVTPVFEGIIVKHSIKVGQGGSTLLMVEAKDKAIKLTGARKSAYFSEKTDSDILSELASGAGLQTDITATSFSHKQMVQFDTTDWDFMLTRAEANSMLVLTDDGKIVVGKPATAGPAVLTALFGSNIMEFEAEMDARRQFKSVKADSWSPVNLELDESSDGTAVFTEPGNISSSELADILGAEIQLSHTGNLSQQQLQDWADAYALRSKLSKAVGRVRIQGSADAKPGVMLTLSGVGDRFNGDVLVTGVLHHFDGNWTSDVQFGWADDWFYKKDDVTNKPAAGLLPGIHGLQVGTVVDTADPEGNYRLKVHVPTISGGGDGFWARVISPDAGQDRGLYFRPQTGDEVILGFLNDDPREPIVLGCMHSKDKKALPFRENEEFGVITKEKVKVLLDDTNKKLTLSVTTGSGDKTIILNDSGAMELKDEYGNSIKMEQSGITIQASANVTIKGAQVLIN*