ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_4894_57

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: comp(53444..54868)

Top 3 Functional Annotations

Value Algorithm Source
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.1
  • Coverage: 427.0
  • Bit_score: 511
  • Evalue 8.60e-142
diaminopimelate decarboxylase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744D7F similarity UNIREF
DB: UNIREF100
  • Identity: 62.9
  • Coverage: 428.0
  • Bit_score: 537
  • Evalue 1.00e-149
diaminopimelate decarboxylase similarity KEGG
DB: KEGG
  • Identity: 59.1
  • Coverage: 430.0
  • Bit_score: 508
  • Evalue 1.10e-141

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1425
ATGGTTCCGATTTCTAGGGGCATGGTTTCCGCCCTTCAAAATGGCCATGGCGGACATGATGCTGAAAACGTCGAAGCGGCGAAAACTTCCGACTTCGCCAACGTTGACACGCGCGGGCGGCCACCGCATTTTTCCCCGGTGCATTCCTTTTCGTATCGTGACCAGTCCCTCTTTTGTGAGGGCGTGAGCCTGGAGAAGATCGCCGACGAGGTCGGGACTCCGGCCTACGTGTATTCCAGTGAGACGATCCGGCAGAATTTCCGCCGCCTCGACGCAGCGCTCAAGCCGCTCGACCACCTCATCTGCTATGCCGTCAAGGCGAACTCCAACCTAGCCATCCTCGATCTCCTGCGCAAGGAGGGGGCCGGGTTTGACATCGTCTCCGGGGGCGAGCTCTTCCGCGTGCAAAAGGCGGGGGGCGACCCGGGTCGGTGCACATTTGCCGGGGTGGGCAAGACGGAGCAGGAGATCGAGTATGCCATCCAGGCGGGCGTGTATTCCTTCAACGTCGAGAGCGAGCCGGAGCTCGAGCGCATCAACGACGTGGCGGGGCGCCTCGGCGTGAAAGCCCCGATCGCCGTGCGCGTGAATCCCAACGTGGACGCTCACACGCACAAGTACATCTCGACTGGCAAGAGCCAGAACAAGTTCGGCGTCGGCCTCGACCGTGCGGCGGAGGTTTACGCCCATGCGGCCACGCTGCCCCATCTCATCCTGCGCGGTGTGCAGACGCACATCGGGTCGCAGATCCTCGACCCCGCGCCCTTCGCTGAGGCGGCGGCCAAGCTGGTGCCGCTGGTCGAGCACCTGCGCGACACGTACAAGATCGAGTTTTTCAGCATCGGCGGCGGTGTCGGCATCGTCTATGACGAGGCCCTGGCCAGCGGCGATCCCGCCTGGTGGGAATCCGTCGACCACCCGAAGCGCATCACGCCGGAAGCCTACGCCGCCGCGATCGTGCCGATCCTCCAGCCGCTCGGTTTGCGGATTCTCTTTGAGCCGGGCCGGTTCATGGTCGGTAATGCGGGCGTGCTTCTGAGCACGGTGCAGTATGTGAAGAAGACTCCGGCCAAGACCTTCACCGTCGTCGACGCGGCGATGAACGATCTCATCCGTCCCGCGCTTTACGAGGGCTATCATGAGATCGTGCCGCTGAAGAAAACCGCCAGCGAGCCCGAGCCGATGGATGTCGTCGGCCCGGTCTGCGAGAGCGGCGACTTTTTCGCCCAGGATCGCACGGTGCCCACGCTCACCCAGGGCGAACGCATCGCGCTCATGAGCTCGGGCGCGTACGGATTTGTGATGTCGTCGAACTACAATTCGCGCCCGCTCCTGCCCGAGGTGCTGGTCGATGGCGAGAAGTCCGCCGTGATCCGCCAGCGCCAGACGCTCGACGATCTCATCGCAGGCGAGGTGATCCCGTAA
PROTEIN sequence
Length: 475
MVPISRGMVSALQNGHGGHDAENVEAAKTSDFANVDTRGRPPHFSPVHSFSYRDQSLFCEGVSLEKIADEVGTPAYVYSSETIRQNFRRLDAALKPLDHLICYAVKANSNLAILDLLRKEGAGFDIVSGGELFRVQKAGGDPGRCTFAGVGKTEQEIEYAIQAGVYSFNVESEPELERINDVAGRLGVKAPIAVRVNPNVDAHTHKYISTGKSQNKFGVGLDRAAEVYAHAATLPHLILRGVQTHIGSQILDPAPFAEAAAKLVPLVEHLRDTYKIEFFSIGGGVGIVYDEALASGDPAWWESVDHPKRITPEAYAAAIVPILQPLGLRILFEPGRFMVGNAGVLLSTVQYVKKTPAKTFTVVDAAMNDLIRPALYEGYHEIVPLKKTASEPEPMDVVGPVCESGDFFAQDRTVPTLTQGERIALMSSGAYGFVMSSNYNSRPLLPEVLVDGEKSAVIRQRQTLDDLIAGEVIP*