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berkeley_reactor_200306_planktonic_scaffold_4894

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_4894_1
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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2..136
DNA (135bp) protein (45aa)
Major facilitator transporter n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1J003_9BACT
sodium:melibiose symporter
Sodium:melibiose symporter {ECO:0000313|EMBL:AHF90051.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_4894_2
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

188..1186
DNA (999bp) protein (333aa)
Signal transduction histidine kinase, LytS n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNG7_OPITP
signal transduction histidine kinase LytS
Signal transduction histidine kinase, LytS {ECO:0000313|EMBL:ACB74401.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_4894_3
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

1183..1914
DNA (732bp) protein (244aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNG8_OPITP
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ACB74402.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_4894_4
unknown

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1993..2376
DNA (384bp) protein (128aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4894_5
unknown

Not on your lists

2337..2618
DNA (282bp) protein (94aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4894_6
unknown

Not on your lists

2619..2948
DNA (330bp) protein (110aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4894_7
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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2935..5565
DNA (2631bp) protein (877aa)
Putative uncharacterized protein id=4668346 bin=GWF2_Lentisphaerae_50_93 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_4894_8
unknown

Not on your lists

5574..5876
DNA (303bp) protein (101aa)
id=4457836 bin=GWF2_Lentisphaerae_38_69 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
berkeley_reactor_200306_planktonic_scaffold_4894_9
unknown

Not on your lists

5909..6784
DNA (876bp) protein (292aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4894_10
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6819..8033
DNA (1215bp) protein (405aa)
Putative uncharacterized protein n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=G8WSC8_STREN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW95762.1}; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
berkeley_reactor_200306_planktonic_scaffold_4894_11
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

8040..8672
DNA (633bp) protein (211aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IRY6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF92531.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_4894_12
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

8677..9510
DNA (834bp) protein (278aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94691.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_4894_13
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

9507..10493
DNA (987bp) protein (329aa)
Putative uncharacterized protein id=4668338 bin=GWF2_Lentisphaerae_50_93 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_4894_14
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

10490..11242
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS5_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94692.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_4894_15
unknown

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11247..11531
DNA (285bp) protein (95aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4894_16
unknown

Not on your lists

11610..11969
DNA (360bp) protein (120aa)
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4894_17
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

12046..12261
DNA (216bp) protein (72aa)
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_4894_18
unknown

Not on your lists

12327..12584
DNA (258bp) protein (86aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4894_19
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

12581..13030
DNA (450bp) protein (150aa)
PilT domain-containing protein n=2 Tax=unclassified Opitutaceae RepID=H1IWV3_9BACT
twitching motility protein PilT
Twitching motility protein PilT {ECO:0000313|EMBL:AHF89210.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_4894_20
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

13051..14394
DNA (1344bp) protein (448aa)
Site-specific recombinase, phage integrase family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JL57_9BACT
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_4894_trna_1
unknown

Not on your lists

comp(14332..14405)
DNA (74bp)
transferRNA Pro
berkeley_reactor_200306_planktonic_scaffold_4894_21
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

15004..15771
DNA (768bp) protein (256aa)
Beta-lactamase id=3602350 bin=GWF2_Lentisphaerae_49_21 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
beta-lactamase
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_4894_22
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(15803..17011)
DNA (1209bp) protein (403aa)
Conserved hypothetical exported protein n=1 Tax=Bacteroides coprophilus CAG:333 RepID=R6SSD5_9BACE
beta-xylosidase
Tax=GWC2_Ignavibacteria_rel_36_12_curated
berkeley_reactor_200306_planktonic_scaffold_4894_23
unknown

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comp(17077..17826)
DNA (750bp) protein (250aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4894_24
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(18035..19867)
DNA (1833bp) protein (611aa)
NAD/FAD-utilizing enzyme apparently involved in cell division n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AN47_9BACT
FAD-dependent oxidoreductase
FAD-dependent oxidoreductase {ECO:0000313|EMBL:AHF93478.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_4894_25
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19952..22156)
DNA (2205bp) protein (735aa)
Alpha-galactosidase 1 {ECO:0000313|EMBL:CCQ96697.1}; EC=3.2.1.22 {ECO:0000313|EMBL:CCQ96697.1};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
Alpha-galactosidase 1 n=1 Tax=Clostridium ultunense Esp RepID=M1ZL72_9CLOT
alpha-galactosidase
berkeley_reactor_200306_planktonic_scaffold_4894_26
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(22256..23233)
DNA (978bp) protein (326aa)
Transcriptional regulator n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ASM0_9BACT
LacI family transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:AHF91156.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_4894_27
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(23303..24196)
DNA (894bp) protein (298aa)
Transcriptional regulator, AraC family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5Y6_9BACT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDY18189.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_4894_28
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

24302..26074
DNA (1773bp) protein (591aa)
L-fucose isomerase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4U2_CALAS
fucI; L-fucose isomerase
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
berkeley_reactor_200306_planktonic_scaffold_4894_29
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

26067..26822
DNA (756bp) protein (252aa)
Class II aldolase/adducin family protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZTE4_OPITP
class II aldolase/adducin family protein
Class II aldolase/adducin family protein {ECO:0000313|EMBL:ACB76598.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Displaying items 1-30 of 84 in total

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