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berkeley_reactor_200306_planktonic_scaffold_4894

Search features with annotation key words

Displaying items 31-60 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_4894_30
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(26983..27201)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCN1_9BACT
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
translation initiation factor IF-1
berkeley_reactor_200306_planktonic_scaffold_4894_31
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(27391..28044)
DNA (654bp) protein (218aa)
TetR family transcriptional regulator id=14424498 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
acrR; TetR family transcriptional regulator
Tax=CSP1_2_Dadabacteria
berkeley_reactor_200306_planktonic_scaffold_4894_32
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(28354..28812)
DNA (459bp) protein (153aa)
SUF system FeS assembly protein, NifU family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D357_9BACT
SUF system FeS assembly protein, NifU family {ECO:0000313|EMBL:EDY19168.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
NifU family SUF system FeS assembly protein
berkeley_reactor_200306_planktonic_scaffold_4894_33
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(28809..30032)
DNA (1224bp) protein (408aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Cysteine desulfurase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D358_9BACT
cysteine desulfurase
berkeley_reactor_200306_planktonic_scaffold_4894_34
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

30136..30477
DNA (342bp) protein (114aa)
Anti-sigma factor antagonist n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7P2_9BACT
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
anti-anti-sigma regulatory factor
berkeley_reactor_200306_planktonic_scaffold_4894_35
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

30484..31245
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7P1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17531.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4894_36
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

31245..32090
DNA (846bp) protein (282aa)
ABC transporter-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7P0_9BACT
ABC transporter-related protein {ECO:0000313|EMBL:EDY17530.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ABC transporter-like protein
berkeley_reactor_200306_planktonic_scaffold_4894_37
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(32094..32726)
DNA (633bp) protein (211aa)
Lytic transglycosylase catalytic n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7U3_9BACT
Lytic transglycosylase catalytic {ECO:0000313|EMBL:EDY17466.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
mltE; Soluble lytic murein transglycosylase
berkeley_reactor_200306_planktonic_scaffold_4894_38
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

32784..35003
DNA (2220bp) protein (740aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Primosomal protein N n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7U4_9BACT
primosomal protein N'
berkeley_reactor_200306_planktonic_scaffold_4894_39
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

35116..35805
DNA (690bp) protein (230aa)
Integral membrane protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMA9_9BACT
Integral membrane protein {ECO:0000313|EMBL:EDY82520.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
nodulin-related integral membrane protein
berkeley_reactor_200306_planktonic_scaffold_4894_40
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35906..37291
DNA (1386bp) protein (462aa)
C4-dicarboxylate ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036CE5B7
C4-dicarboxylate transporter DctA
C4-dicarboxylate transport protein {ECO:0000256|HAMAP-Rule:MF_01300}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
berkeley_reactor_200306_planktonic_scaffold_4894_41
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

37387..38799
DNA (1413bp) protein (471aa)
Anion transporter n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01Z65_SOLUE
anion transporter
Anion transporter {ECO:0000313|EMBL:ABJ85050.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_4894_42
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38802..40151)
DNA (1350bp) protein (450aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000361B2DD
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_4894_43
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40148..40813)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003765DF5
cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator
Two-component system, OmpR family, copper resistance phosphate regulon response regulator {ECO:0000313|EMBL:BAL27202.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
berkeley_reactor_200306_planktonic_scaffold_4894_44
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40951..41982
DNA (1032bp) protein (344aa)
OmpA/MotB n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SRL6_NITWN
OmpA/MotB domain protein {ECO:0000313|EMBL:CDX21354.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
OmpA/MotB protein
berkeley_reactor_200306_planktonic_scaffold_4894_45
unknown

Not on your lists

comp(42132..42932)
DNA (801bp) protein (267aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4894_46
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43186..43668)
DNA (483bp) protein (161aa)
OsmC family protein id=2584129 bin=GWF1_Rhodobacteraceae_65_7 species=Ketogulonicigenium vulgare genus=Ketogulonicigenium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
General stress protein 17O
Tax=GWF1_Rhodobacteraceae_65_7_curated
berkeley_reactor_200306_planktonic_scaffold_4894_47
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43671..44690)
DNA (1020bp) protein (340aa)
penicillin amidase (EC:3.5.1.11)
Penicillin amidase n=1 Tax=Cyanobacterium aponinum (strain PCC 10605) RepID=K9ZAH5_CYAAP
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
berkeley_reactor_200306_planktonic_scaffold_4894_48
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44790..46154)
DNA (1365bp) protein (455aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVR5_OPITP
integral membrane sensor signal transduction histidine kinase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
berkeley_reactor_200306_planktonic_scaffold_4894_49
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(46151..46828)
DNA (678bp) protein (226aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVR4_OPITP
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACB75000.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_4894_50
Nonlabens sediminis, Nonlabens, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

47043..48203
DNA (1161bp) protein (387aa)
Geranylgeranyl bacteriochlorophyll reductase-like protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VL54_9BACT
Uncharacterized protein {ECO:0000313|EMBL:GAK96340.1}; TaxID=319236 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Nonlabens.;" source="Nonlabens sediminis.;"
geranylgeranyl reductase
berkeley_reactor_200306_planktonic_scaffold_4894_51
unknown

Not on your lists

48347..48712
DNA (366bp) protein (122aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4894_52
unknown

Not on your lists

48809..49072
DNA (264bp) protein (88aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4894_53
Acinetobacter sp. NIPH 2171, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48997..49476)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. NIPH 2171 RepID=N9MS08_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ENX11374.1}; TaxID=1217693 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. NIPH 2171.;"
thiol-disulfide oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_4894_54
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(49442..50773)
DNA (1332bp) protein (444aa)
UDP-N-acetylmuramate n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5U0_9BACT
UDP-N-acetylmuramate {ECO:0000313|EMBL:EDY18143.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
berkeley_reactor_200306_planktonic_scaffold_4894_55
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(50870..52018)
DNA (1149bp) protein (383aa)
sulfite reductase flavoprotein subunit (EC:1.8.1.2)
FAD-binding domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWY6_9BACT
FAD-binding domain protein {ECO:0000313|EMBL:EDY21306.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_4894_56
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52142..53359
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Geobacter sp. (strain M21) RepID=C6E660_GEOSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT19612.1}; TaxID=443144 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
berkeley_reactor_200306_planktonic_scaffold_4894_57
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(53444..54868)
DNA (1425bp) protein (475aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
diaminopimelate decarboxylase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744D7F
diaminopimelate decarboxylase
berkeley_reactor_200306_planktonic_scaffold_4894_58
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

comp(54875..55315)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Leptonema illini DSM 21528 RepID=H2CDG0_9LEPT
Tax=GWA2_WOR_2_47_8_curated
berkeley_reactor_200306_planktonic_scaffold_4894_59
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(55411..56406)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9P5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16826.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
Displaying items 31-60 of 84 in total

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