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berkeley_reactor_200306_planktonic_scaffold_59817_126

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: comp(137022..138131)

Top 3 Functional Annotations

Value Algorithm Source
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.4
  • Coverage: 364.0
  • Bit_score: 509
  • Evalue 2.60e-141
3-isopropylmalate dehydrogenase (EC:1.1.1.85) similarity KEGG
DB: KEGG
  • Identity: 67.6
  • Coverage: 364.0
  • Bit_score: 485
  • Evalue 1.40e-134
3-isopropylmalate dehydrogenase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745098 similarity UNIREF
DB: UNIREF100
  • Identity: 69.8
  • Coverage: 368.0
  • Bit_score: 510
  • Evalue 1.40e-141

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Taxonomy

Chthoniobacter flavus → Chthoniobacter → Spartobacteria → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1110
ATGGGTAAATCTTACAAAATCGCCGTCCTTGCCGGCGATGGCATTGGCCCCGAGGTGATGGCGCAGGCCCTCCGCGTGCTGGCCGTGGTCGAGACGAAATTCTCGCTGAAATTTGAGTTTTTTGAACGTCTGGTCGGCGGAGCCGCCATTGACGGAGCTGGAAAAGCCCTGCCCGAGGAAACCCTCAAGACGTGTGAAGACTGCCAGGCCATCCTTTTCGGGTCTGTAGGCGGCCCCAAGTGGGAATCCCTGCCTCCGGCCGAGCAGCCGGAGCGCGGCGCCCTGCTGCCCCTGCGCAAGCATTTCGGACTTTTTGCCAACCTTCGCCCGGCGGTCTGTCTGCCGGAGCTGACCCATGCCTCGCCGTTGCACCCGACGATCGTCGAGGGCGGGTTTGATGTTCTCTGTGTCCGCGAACTCACCGGCGGTCTGTATTTCGGTGAGCCCAAGTACATTAAGCAGGAAGGCAATGAGCATTTCGCCGTCGATACGATGGTATACTGGGAGAGCGAAATCCGCCGCATTGCGAAGGTGGCCTTCGAAGCCGCCCGCCGCCGCAAGTCGCACGTCACCTCGATCGACAAAGCCAACGTGCTCCAGAACGGCGTCCTCTGGCGTCGTGTGGTGGACGAGGTAGGCAAGGATTACCCCGACGTGACCCTCGACCACCTGTATGTCGACAACGCCGCCATGCAACTCGTGCGCCGACCCAAGTTTTTTGACGTCGTCCTCGCCGAGAATCTTTTCGGAGACATCCTCAGCGACGAAATGGCCATGCTCACCGGTTCGCTGGGCATGCTCCCGAGCGCCAGCCTGGGCGAAACCCACGAGGGTTCCACCTCCCGGTTCGGCATGTACGAGCCGAGCGGCGGGTCCGCCCCCGACATCGCAGGCAAGGGCATTGCCAACCCGATCGCCCAGATCCTGTCCTCTGCCATGCTGCTCCGTTTCTCCTGTGGAGAAGAGGCTGCGGCTGCCGCCATCGAGGCGGCGGTGAAGAAGGTGATCGCCGATGGATTGCGCACAGCCGACATCCATACGCCGGGTACCACGAAGGTGGATACGGCGGGAATGGGTCAGGCGATCGCCGATGCCGTTGCGGTTGCGTAA
PROTEIN sequence
Length: 370
MGKSYKIAVLAGDGIGPEVMAQALRVLAVVETKFSLKFEFFERLVGGAAIDGAGKALPEETLKTCEDCQAILFGSVGGPKWESLPPAEQPERGALLPLRKHFGLFANLRPAVCLPELTHASPLHPTIVEGGFDVLCVRELTGGLYFGEPKYIKQEGNEHFAVDTMVYWESEIRRIAKVAFEAARRRKSHVTSIDKANVLQNGVLWRRVVDEVGKDYPDVTLDHLYVDNAAMQLVRRPKFFDVVLAENLFGDILSDEMAMLTGSLGMLPSASLGETHEGSTSRFGMYEPSGGSAPDIAGKGIANPIAQILSSAMLLRFSCGEEAAAAAIEAAVKKVIADGLRTADIHTPGTTKVDTAGMGQAIADAVAVA*