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berkeley_reactor_200306_planktonic_scaffold_59817

Search features with annotation key words

Displaying items 1-30 of 558 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_59817_1
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..823
DNA (822bp) protein (274aa)
Putative uncharacterized protein n=1 Tax=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) RepID=A5DD68_PICGU
Uncharacterized protein {ECO:0000313|EMBL:ETX04227.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_2
Geminocystis sp. NIES-3708, Geminocystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

1104..2681
DNA (1578bp) protein (526aa)
reverse transcriptase n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002EF379B
Uncharacterized protein {ECO:0000313|EMBL:BAQ59719.1}; TaxID=1615909 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Geminocystis.;" source="Geminocystis sp. NIES-3708.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_3
unknown

Not on your lists

2703..3182
DNA (480bp) protein (160aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_4
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3190..3882)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017460FA
HPP family
HPP family {ECO:0000313|EMBL:BAO28025.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
berkeley_reactor_200306_planktonic_scaffold_59817_5
unknown

Not on your lists

comp(3908..4420)
DNA (513bp) protein (171aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_6
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

4473..4886
DNA (414bp) protein (138aa)
Transcriptional regulator, MarR family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXA1_OPITP
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ACB76153.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_59817_7
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4942..5340)
DNA (399bp) protein (133aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744C6F
glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
berkeley_reactor_200306_planktonic_scaffold_59817_8
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5638..6171)
DNA (534bp) protein (178aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SVT7_JANMA
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:ABR90745.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
berkeley_reactor_200306_planktonic_scaffold_59817_9
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(6657..8474)
DNA (1818bp) protein (606aa)
Uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AQL0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EIP97301.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_10
unknown

Not on your lists

8642..9085
DNA (444bp) protein (148aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_11
Idiomarina sp. MCCC 1A10513, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9630..10328
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CL05_DESK7
Uncharacterized protein {ECO:0000313|EMBL:KFZ28240.1}; TaxID=1517416 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina sp. MCCC 1A10513.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_12
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10270..10914)
DNA (645bp) protein (215aa)
MarC integral membrane family protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IWJ1_RHOCS
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11148..11546
DNA (399bp) protein (133aa)
Putative transcriptional regulator n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNX5_SINAD
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGA30366.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_59817_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11543..14341
DNA (2799bp) protein (933aa)
Antirepressor regulating drug resistance protein n=2 Tax=Singulisphaera acidiphila RepID=L0DNH4_SINAD
antirepressor regulating drug resistance protein
Antirepressor regulating drug resistance protein {ECO:0000313|EMBL:AGA30365.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_59817_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

14416..15513
DNA (1098bp) protein (366aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWY7_9BACT
berkeley_reactor_200306_planktonic_scaffold_59817_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

15510..16448
DNA (939bp) protein (313aa)
Colicin V production protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWQ1_9BACT
Colicin V production protein {ECO:0000313|EMBL:EDY21843.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_59817_17
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16461..17918
DNA (1458bp) protein (486aa)
glutamyl-tRNA amidotransferase subunit B n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174552C
gatB; Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18297..19427
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N4A2_RHOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE28878.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
berkeley_reactor_200306_planktonic_scaffold_59817_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(20342..22162)
DNA (1821bp) protein (607aa)
GTP-binding protein TypA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAM9_9BACT
GTP-binding protein TypA {ECO:0000313|EMBL:EDY16547.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
GTP-binding protein
berkeley_reactor_200306_planktonic_scaffold_59817_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22415..23890)
DNA (1476bp) protein (492aa)
type I restriction enzyme EcoKI M protein (EC:2.1.1.72)
DNA methyltransferase n=1 Tax=Rudaea cellulosilytica RepID=UPI000363D1BD
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
berkeley_reactor_200306_planktonic_scaffold_59817_21
unknown

Not on your lists

comp(23887..24492)
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003792130
berkeley_reactor_200306_planktonic_scaffold_59817_22
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24467..26311)
DNA (1845bp) protein (615aa)
Uncharacterized protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8C763_MYXFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI61939.1}; TaxID=483219 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
berkeley_reactor_200306_planktonic_scaffold_59817_23
Methanoplanus limicola, Methanoplanus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(26321..27700)
DNA (1380bp) protein (460aa)
Restriction modification system DNA specificity domain-containing protein n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1Z266_9EURY
Restriction modification system DNA specificity domain-containing protein {ECO:0000313|EMBL:EHQ36411.1}; TaxID=937775 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoplanus.;" source="Methanoplanus limicola DSM 2279.;"
restriction modification system DNA specificity domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_59817_24
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

Not on your lists

comp(27697..30558)
DNA (2862bp) protein (954aa)
Type III restriction protein res subunit id=1821236 bin=GWB2_Nitrospirae_rel_47_37 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
type I site-specific deoxyribonuclease
Tax=GWB2_Nitrospirae_47_37_curated
berkeley_reactor_200306_planktonic_scaffold_59817_25
unknown

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30650..30901
DNA (252bp) protein (84aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_26
unknown

Not on your lists

comp(30940..31428)
DNA (489bp) protein (163aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_27
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31878..32630
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000309D676
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF46940.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
berkeley_reactor_200306_planktonic_scaffold_59817_28
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32945..33502
DNA (558bp) protein (186aa)
Outer membrane protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISS8_KORVE
Membrane protein {ECO:0000313|EMBL:KJR62339.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
outer membrane protein
berkeley_reactor_200306_planktonic_scaffold_59817_29
unknown

Not on your lists

comp(33618..34181)
DNA (564bp) protein (188aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_30
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34433..36841)
DNA (2409bp) protein (803aa)
autotransporter, partial n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A8CF
Uncharacterized protein {ECO:0000313|EMBL:KEO52528.1}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
autotransporter beta-domain-containing protein
Displaying items 1-30 of 558 in total

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