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berkeley_reactor_200306_planktonic_scaffold_59817

Search features with annotation key words

Displaying items 61-90 of 558 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_59817_61
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

62187..63107
DNA (921bp) protein (307aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI00037F0758
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_62
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

63113..64189
DNA (1077bp) protein (359aa)
6-phosphofructokinase {ECO:0000313|EMBL:EDY17796.1}; EC=2.7.1.11 {ECO:0000313|EMBL:EDY17796.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6J5_9BACT
berkeley_reactor_200306_planktonic_scaffold_59817_63
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

64194..64715
DNA (522bp) protein (174aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3Q0_9BACT
berkeley_reactor_200306_planktonic_scaffold_59817_64
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64794..66332)
DNA (1539bp) protein (513aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI0002E2BA7B
Na/Pi-cotransporter family protein
Na/Pi-cotransporter family protein {ECO:0000313|EMBL:AAU90771.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
berkeley_reactor_200306_planktonic_scaffold_59817_65
CG_Verruco_01, Verrucomicrobia, Bacteria

Not on your lists

comp(66396..67463)
DNA (1068bp) protein (356aa)
rfaD; ADP-L-glycero-D-manno-heptose-6-epimerase (EC:5.1.3.20)
ADP-L-glycero-D-manno-heptose-6-epimerase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744954
Tax=CG_Verruco_01
berkeley_reactor_200306_planktonic_scaffold_59817_66
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67448..68044)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLL7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63894.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_67
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

68182..69762
DNA (1581bp) protein (527aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0R2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19924.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_68
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

69759..71273
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0R1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19923.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_59817_69
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

71305..71835
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWF1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21743.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_59817_70
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(71844..72692)
DNA (849bp) protein (283aa)
Signal recognition particle receptor FtsY n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X4_9BACT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
signal recognition particle-docking protein FtsY
berkeley_reactor_200306_planktonic_scaffold_59817_71
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(72692..73111)
DNA (420bp) protein (140aa)
N utilization substance protein B homolog n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X5_9BACT
NusB antitermination factor
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_72
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(73125..73577)
DNA (453bp) protein (151aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X6_9BACT
6,7-dimethyl-8-ribityllumazine synthase
berkeley_reactor_200306_planktonic_scaffold_59817_73
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(73662..74864)
DNA (1203bp) protein (401aa)
Riboflavin biosynthesis protein RibBA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X7_9BACT
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase
berkeley_reactor_200306_planktonic_scaffold_59817_74
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(74994..78245)
DNA (3252bp) protein (1084aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI000374F8A0
ribonucleoside-diphosphate reductase subunit alpha
berkeley_reactor_200306_planktonic_scaffold_59817_75
CG_Verruco_01, Verrucomicrobia, Bacteria

Not on your lists

comp(78302..79390)
DNA (1089bp) protein (363aa)
Ribonucleoside-diphosphate reductase subunit beta n=2 Tax=unclassified Opitutaceae RepID=H1ISV4_9BACT
response regulator SirA
Tax=CG_Verruco_01
berkeley_reactor_200306_planktonic_scaffold_59817_76
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

79717..80787
DNA (1071bp) protein (357aa)
Cellulase M or related protein n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DXT7_METI4
frvX; Cellulase M or related protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_77
unknown

Not on your lists

80891..81157
DNA (267bp) protein (89aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_78
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81202..81903)
DNA (702bp) protein (234aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SF14_HAHCH
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:ABC30760.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (strain KCTC 2396).;"
berkeley_reactor_200306_planktonic_scaffold_59817_79
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81900..82871)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U999_MYXSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC45491.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
berkeley_reactor_200306_planktonic_scaffold_59817_80
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(82868..84001)
DNA (1134bp) protein (378aa)
Hypothetical conserved protein n=1 Tax=uncultured prokaryote RepID=H5SCL0_9ZZZZ
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_81
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(84020..85339)
DNA (1320bp) protein (440aa)
Serine hydroxymethyltransferase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFJ1_9BACT
bioF1; class II aminotransferase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_82
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85481..85948)
DNA (468bp) protein (156aa)
Hypothetical membrane protein predicted by Glimmer/Critica n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9F7D0_SORC5
hypothetical protein
Hypothetical membrane protein predicted by Glimmer/Critica {ECO:0000313|EMBL:CAN91525.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
berkeley_reactor_200306_planktonic_scaffold_59817_83
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(86004..86798)
DNA (795bp) protein (265aa)
short-chain dehydrogenase/reductase SDR (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACC84534.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ACC84534.1};; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 73102).;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2IWZ9_NOSP7
berkeley_reactor_200306_planktonic_scaffold_59817_84
unknown

Not on your lists

comp(86853..87485)
DNA (633bp) protein (211aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_85
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

87604..88029
DNA (426bp) protein (142aa)
Ferric uptake regulator, Fur family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D291_9BACT
Ferric uptake regulator, Fur family {ECO:0000313|EMBL:EDY19331.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Fur family ferric uptake regulator
berkeley_reactor_200306_planktonic_scaffold_59817_86
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

88039..88794
DNA (756bp) protein (252aa)
FeS assembly ATPase SufC n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFJ2_9BACT
FeS assembly ATPase SufC
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_87
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

88820..90232
DNA (1413bp) protein (471aa)
FeS assembly protein SufB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D293_9BACT
Fe-S cluster assembly protein SufB
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_88
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

90229..91506
DNA (1278bp) protein (426aa)
FeS assembly protein SufD n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D294_9BACT
FeS assembly protein SufD
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_89
unknown

Not on your lists

comp(91559..91876)
DNA (318bp) protein (106aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_90
unknown

Not on your lists

comp(91924..92166)
DNA (243bp) protein (81aa)

This feature has no annotations

Displaying items 61-90 of 558 in total

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