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berkeley_reactor_200306_planktonic_scaffold_59817

Search features with annotation key words

Displaying items 31-60 of 558 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_59817_31
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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37009..37599
DNA (591bp) protein (197aa)
transcriptional regulator n=1 Tax=Salinispora arenicola RepID=UPI000367C8DF
TetR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
berkeley_reactor_200306_planktonic_scaffold_59817_32
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37632..37919
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LNG4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KGD98410.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_33
unknown

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comp(37926..38912)
DNA (987bp) protein (329aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_34
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38942..39706
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LPI0_DESBD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAO29710.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
berkeley_reactor_200306_planktonic_scaffold_59817_35
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(39792..40160)
DNA (369bp) protein (123aa)
Tax=RBG_13_Planctomycetes_62_9_curated
berkeley_reactor_200306_planktonic_scaffold_59817_36
unknown

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comp(40282..40632)
DNA (351bp) protein (117aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_37
unknown

Not on your lists

comp(40678..41007)
DNA (330bp) protein (110aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_38
unknown

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41191..41526
DNA (336bp) protein (112aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_39
unknown

Not on your lists

41523..41858
DNA (336bp) protein (112aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_40
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(41991..42770)
DNA (780bp) protein (260aa)
methyltransferase type 11 n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174565B
Methyltransferase type 11 {ECO:0000313|EMBL:EPR65913.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
methyltransferase type 11
berkeley_reactor_200306_planktonic_scaffold_59817_41
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

42791..43708
DNA (918bp) protein (306aa)
transcriptional regulator, LysR family protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174565A
Transcriptional regulator {ECO:0000313|EMBL:EIP99004.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_59817_42
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(44374..44847)
DNA (474bp) protein (158aa)
30S ribosomal protein S7 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUX0_9BACT
30S ribosomal protein S7
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_43
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


comp(44854..45267)
DNA (414bp) protein (138aa)
30S ribosomal protein S12 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUW9_9BACT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
30S ribosomal protein S12
berkeley_reactor_200306_planktonic_scaffold_59817_44
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(45496..47427)
DNA (1932bp) protein (644aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452, ECO:0000256|SAAS:SAAS00222031}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUG4_OPITP
berkeley_reactor_200306_planktonic_scaffold_59817_45
unknown

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comp(47518..48114)
DNA (597bp) protein (199aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_46
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(48415..49065)
DNA (651bp) protein (217aa)
DNA-3-methyladenine glycosylase II {ECO:0000313|EMBL:EDY20532.1}; EC=3.2.2.21 {ECO:0000313|EMBL:EDY20532.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
alkA; DNA-3-methyladenine glycosylase (EC:3.2.2.21)
DNA-3-methyladenine glycosylase II n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYJ1_9BACT
berkeley_reactor_200306_planktonic_scaffold_59817_47
unknown

Not on your lists

comp(49062..49820)
DNA (759bp) protein (253aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_48
unknown

Not on your lists

comp(49993..50082)
DNA (90bp) protein (30aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_49
unknown

Not on your lists

50130..50366
DNA (237bp) protein (79aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_50
unknown

Not on your lists

comp(50450..50737)
DNA (288bp) protein (96aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_51
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(50808..52655)
DNA (1848bp) protein (616aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5W5_9BACT
glmS; glucosamine 6-phosphate synthetase
berkeley_reactor_200306_planktonic_scaffold_59817_52
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

52774..54021
DNA (1248bp) protein (416aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|RuleBase:RU003565, ECO:0000256|SAAS:SAAS00055636}; EC=2.7.7.27 {ECO:0000256|RuleBase:RU003565, ECO:0000256|SAAS:SAAS00055636};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5V1_9BACT
berkeley_reactor_200306_planktonic_scaffold_59817_53
unknown

Not on your lists

54038..54622
DNA (585bp) protein (195aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_54
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

54815..55507
DNA (693bp) protein (231aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4U5_9BACT
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EDY18548.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
putative two component transcriptional regulator, winged helix family
berkeley_reactor_200306_planktonic_scaffold_59817_55
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

55504..56787
DNA (1284bp) protein (428aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CIV3_DESK7
multi-sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_59817_56
unknown

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56844..57554
DNA (711bp) protein (237aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_57
unknown

Not on your lists

comp(57561..57776)
DNA (216bp) protein (72aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_58
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

57889..58827
DNA (939bp) protein (313aa)
prolipoprotein diacylglyceryl transferase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746B96
prolipoprotein diacylglyceryl transferase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_59
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

58850..61507
DNA (2658bp) protein (886aa)
DNA ligase {ECO:0000256|RuleBase:RU000617}; EC=6.5.1.1 {ECO:0000256|RuleBase:RU000617};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ATP-dependent DNA ligase I (EC:6.5.1.1)
DNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D409_9BACT
berkeley_reactor_200306_planktonic_scaffold_59817_60
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(61514..62044)
DNA (531bp) protein (177aa)
cytochrome C n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746004
Putative uncharacterized protein {ECO:0000313|EMBL:EDY81538.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
FmdB family regulatory protein
Displaying items 31-60 of 558 in total

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