ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_59817_464

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: 526146..529850

Top 3 Functional Annotations

Value Algorithm Source
Methionine synthase {ECO:0000313|EMBL:CBK41595.1}; EC=2.1.1.13 {ECO:0000313|EMBL:CBK41595.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.7
  • Coverage: 1231.0
  • Bit_score: 1585
  • Evalue 0.0
metH; methionine synthase (EC:2.1.1.13) similarity KEGG
DB: KEGG
  • Identity: 64.7
  • Coverage: 1231.0
  • Bit_score: 1585
  • Evalue 0.0
Methionine synthase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PED6_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 64.7
  • Coverage: 1231.0
  • Bit_score: 1585
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Nitrospira defluvii → Nitrospira → Nitrospirales → Nitrospira → Nitrospirae → Bacteria

Sequences

DNA sequence
Length: 3705
ATGAGTCCTGTCGAAAAAGAACTCCGCGACCTGCTGTCTCAACGCATCCTCATCCTCGATGGAGCGATGGGTACGATGGTGCAGCGTTACAAGCTGCAGGAGGCTGATTATCGCGGCGAGCGCTTCGCCGAATGGCCCATCGATCTCAAAGGCAACAACGACCTGCTCGTGCTGACGAAGCCCGAAGTCATCCGCGAGATTCACAGCCAGTACGTCGCCGCCGGAGCCGACATCATCGAGACGAACACCTTCAGCGACACGCGCATCGCCATGGCCGATTACGGCCTGGAGGATTACGTGCCGGAGCTGAACCGCGCCGCTGCCCGCCTCGCTCGCGAGGCCGCCGATGCCTGCACGGATCGCCGCGTTTTCGTGGCCGGAGCCATCGGGCCGCTCAATCGCACGCTGTCGATTTCGCGCGACGTGAATGATCCCGGCAAGCGCGAGGTGACCTTTACCCAGGTGGTCGAGAGCTACTACGAGCAGGTGGAAAATCTCGTCATCGGCGGGGTCGACATCCTGCTGGTCGAGACGATCTTTGACACGCTCAATGCGAAAGCCGCGCTCTTTGCCATCGCGCAGTATTTCGAGAAGTCGGGCGCCTCGCTCCCCGTGATGGTAAGCGGTACGATCACCGACCTGAGCGGTCGCACGCTCACGGGCCAGACGGTCGAGGCGTTCCTGAATTCCGTCTCGCATTTTCCGCTCCTCTCCATCGGCCTCAACTGCGCCCTCGGGCCGCAGGAGATGCGCCCGTACATTGAGGAGTTGAGCAACAAGGCGCCGTTCTTCGTCAGCACGTATCCGAATGCCGGATTGCCCGACCCGCTATCGCCGACCGGCTTCCCCGAGACGCCGGACACGCTCGCGCCGAAGCTGCGCGAGTGGGCCGAGCAGGGCTGGCTCAACATCATCGGCGGCTGCTGCGGCACCACGCCCGACCACATCCGCGCCATCGCGCAGATCGTGAAGGGCTACGCTCCGCGCGTAATCCCGCAGCGCACGCGCACCCTCCGCCTGAGCGGGCTGGAGGCCTTTGAGGCCCGGCCGGAGATTCCTTTCATCAACATCGGCGAACGCACGAACGTCACGGGCTCGCCGCGCTTCGCCAAGCTTATCCTCGCGGACAACTACGACGAGGCTCTCGCCGTCGCCCGCCAGCAGGTTGAGGCCGGCGCGCAGGTGATCGACATCAACATGGACGAGGGCATGCTCGACGGTCCGGCGGCCATGACGCGCTTCCTCAATCTCATCGCCAGCGAACCCGACATCTCGCGCGTGCCGATCATGATCGACTCGTCGAAGTGGGAGGTCATCGAGGCCGGGTTGCGCTGCATCCAGGGCAAGGGAATCGTCAATTCCATCTCGCTCAAGGCGGGCGAGGAGGAGTTCAAGCGCCAGGCACGGCTCGTGCGCGATTACGGCGCAGCGGTCATCGTGATGGCCTTTGACGAAAGCGGGCAGGCCGACAGCTTCCAGCGCAAGACGGAGATTTGCTCCCGCGCCTACCGCATCCTCACGGAGGAAGTGGGCTTCCCCGCAGAGGACATCATTTTCGACCCCAACGTGCTCACCGTCGCCACCGGCATCGAGGAGCACAATGAGTACGCCAAGGCGTTCATCGACGCCACCCGCTGGATCAAGGAAAACCTGCCCTACGCCCGCGTGAGCGGCGGCATCAGCAATATTTCCTTCTCCTTCCGTGGCAACAACGCCGTGCGTGAGGCCATGCACAGCGCGTTCCTGTATCACGGCATCCGCGCGGGTCTGGACATGGGCATCGTCAACGCCGGCCAGCTCGGCGTGTACGAGGAAATCCCCGCCGATCTGCTCGAGCTCATCGAGGACGTGCTCTTTAGTCGTCGTCCCGATGCCACCGAGCGGCTCGTCGCTTTTGCCGAAGAGATCAAGAACAAGTCCGCGGGCAAAACGCGCGAAAGCACGATCGACCTTTCCTGGCGCAACGAGTCGGTCGAAGAACGGCTCAAGCACGCCCTTATCAAGGGCATCGTGGATTTCATCGACGAGGATACCGAGGAGGCCCGCCTGAAATACGGCAAGCCGCTCACCGTCATCGAGGGTCCGCTCATGGACGGCATGAAGGTCGTCGGCGATCTCTTCGGAGCAGGCAAAATGTTCCTGCCGCAGGTCGTGAAGAGCGCTCGCGTGATGAAGAAATCCGTGGCGTGGCTCATGCCCTACATGGAAGCCGAGCGCGCGGCCAATCCCAACGCCCGCGCCCAGGGCCGCATCCTCATGGCGACCGTAAAAGGCGACGTCCACGATATCGGCAAGAATATCGTCGGCGTGGTGCTCGCGTGTAACAACTACGAGGTGATCGACCTCGGCGTGATGGTGCCGTGCGAGAAGATTTTACAGACCGCCCGCGAGAAGGATTGTGACGTGATCGGCCTGAGCGGCCTGATTACACCGTCGCTCGACGAGATGATCCATGTCGCCAAGGAAATGACGCGGGCCGGATTCACCATCCCGCTGCTCATCGGCGGCGCGACCACGAGCAAGGCGCACACGGCGGTGAAGATCGAGCAGCATTACGAACCCGGCGTCGTCCACGTGCTGGACGCCAGCCGCAGCGTCAATGTCGTGAGTTCGCTCCTCAGCCCCGAGCAGAAGCCGGGCTTCATGACCCAGCTCAAGGCCGACTACCAGCAGCTCCGCGAGGAATACGGCAACCGCACCGGTGAGCGCGAATATGCCCCGCTCGAGCAGGCGCGCGCCAATCCGTTCCGCGCCGACTTCAGCGAGATCGCGAAGCCGGAGACAGTCGGCATCGTCGAGTTCAATGACGTGCCTCTCGAGGAGCTGGCCGAGTTTATTGACTGGTCCCCGTTCTTCCACGCGTGGGAGTTGCGCGGTCGTTTCCCCGCCATCCTCGATGACGAGGTGGTGGGCGAGGAGGCGCGCAAGCTCTACGCCGACGCGAAGCAGCTCCTCGACGAGATCATCAGCAAGAAGCTCTTCAAGCCGCGCGGCGTGTTTGGCTTCTGGGCCGCAAATTCCGTCGGCGACGACATCCAGCTTTACCGCGACGCGGAGGGCAAGGAGCCGCTGGCCGTGCTCCATACCCTGCGCCAGCAGACCTTGCGCAAGAAGGGTGAGCCCAATTACGCGCTGGCCGATTTCGTCGCGCCGCGTGAGAGCGGAGTCGTTGACTATGTCGGAGCCTTTGCCGTCACGGCCGGTCCGGAGGTGCACGAGGTGGCCGACGAGTACGAGCGCAACCACGACGATTATCTTTCCATCATGACGAAGGCGCTGGGCGACCGTTTCGCCGAGGCCTTTGCCGAGTACCTGCACAAGAAGGCGCGTGAGAACTGGGGCTTCGGCAAGACCGAGGGCCTGAGCAACGACGACCTCATCCGCGAGCGCTATCGCGGCATCCGCCCCGCGCCGGGCTATCCCGCGCAGCCGGATCATACCGAGAAGCGCACGATTTGGGAGATCCTCGACGTTGAGAAGCGCACGGGCATCAGCCTCACCGAGAGCCTCGCCATGTACCCGGGCAGCAGCGTGAGCGGCCTGTATTTCGGGCACGCGCAGGCGAAATACTTCCCGGCCAACCGCATCTGCCGCGACCAGATCGAGGACTACGCCGCCCGCAAGGGAATGAGCGTCGCCGAGGTCGAGAAGTGGCTCCAGTCGTACCTCACCTACGATCCCGACACCCTTTCCAAACAAGCCTAA
PROTEIN sequence
Length: 1235
MSPVEKELRDLLSQRILILDGAMGTMVQRYKLQEADYRGERFAEWPIDLKGNNDLLVLTKPEVIREIHSQYVAAGADIIETNTFSDTRIAMADYGLEDYVPELNRAAARLAREAADACTDRRVFVAGAIGPLNRTLSISRDVNDPGKREVTFTQVVESYYEQVENLVIGGVDILLVETIFDTLNAKAALFAIAQYFEKSGASLPVMVSGTITDLSGRTLTGQTVEAFLNSVSHFPLLSIGLNCALGPQEMRPYIEELSNKAPFFVSTYPNAGLPDPLSPTGFPETPDTLAPKLREWAEQGWLNIIGGCCGTTPDHIRAIAQIVKGYAPRVIPQRTRTLRLSGLEAFEARPEIPFINIGERTNVTGSPRFAKLILADNYDEALAVARQQVEAGAQVIDINMDEGMLDGPAAMTRFLNLIASEPDISRVPIMIDSSKWEVIEAGLRCIQGKGIVNSISLKAGEEEFKRQARLVRDYGAAVIVMAFDESGQADSFQRKTEICSRAYRILTEEVGFPAEDIIFDPNVLTVATGIEEHNEYAKAFIDATRWIKENLPYARVSGGISNISFSFRGNNAVREAMHSAFLYHGIRAGLDMGIVNAGQLGVYEEIPADLLELIEDVLFSRRPDATERLVAFAEEIKNKSAGKTRESTIDLSWRNESVEERLKHALIKGIVDFIDEDTEEARLKYGKPLTVIEGPLMDGMKVVGDLFGAGKMFLPQVVKSARVMKKSVAWLMPYMEAERAANPNARAQGRILMATVKGDVHDIGKNIVGVVLACNNYEVIDLGVMVPCEKILQTAREKDCDVIGLSGLITPSLDEMIHVAKEMTRAGFTIPLLIGGATTSKAHTAVKIEQHYEPGVVHVLDASRSVNVVSSLLSPEQKPGFMTQLKADYQQLREEYGNRTGEREYAPLEQARANPFRADFSEIAKPETVGIVEFNDVPLEELAEFIDWSPFFHAWELRGRFPAILDDEVVGEEARKLYADAKQLLDEIISKKLFKPRGVFGFWAANSVGDDIQLYRDAEGKEPLAVLHTLRQQTLRKKGEPNYALADFVAPRESGVVDYVGAFAVTAGPEVHEVADEYERNHDDYLSIMTKALGDRFAEAFAEYLHKKARENWGFGKTEGLSNDDLIRERYRGIRPAPGYPAQPDHTEKRTIWEILDVEKRTGISLTESLAMYPGSSVSGLYFGHAQAKYFPANRICRDQIEDYAARKGMSVAEVEKWLQSYLTYDPDTLSKQA*