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berkeley_reactor_200306_planktonic_scaffold_59817

Search features with annotation key words

Displaying items 451-480 of 558 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_59817_449
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(511935..513362)
DNA (1428bp) protein (476aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
Adenosylhomocysteinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZK1_9BACT
berkeley_reactor_200306_planktonic_scaffold_59817_450
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(513403..514575)
DNA (1173bp) protein (391aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthetase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017448D0
berkeley_reactor_200306_planktonic_scaffold_59817_451
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

514620..515540
DNA (921bp) protein (307aa)
Transcriptional regulator, TrmB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZJ9_9BACT
transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_452
uncultured Jannaschia sp., Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(515578..516237)
DNA (660bp) protein (220aa)
glycoside hydrolase, family 24 n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746B6E
Peptidase_M15_2 {ECO:0000313|EMBL:AIA89465.1}; Flags: Fragment;; TaxID=293347 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia; environmental samples.;" source="uncultured Jannaschia sp.;"
Peptidase M15A
berkeley_reactor_200306_planktonic_scaffold_59817_453
RBG_13_Spirochaetes_51_14_curated, Spirochaetes, Bacteria

Not on your lists

comp(516361..517632)
DNA (1272bp) protein (424aa)
UPI0003D05552 related cluster n=1 Tax=unknown RepID=UPI0003D05552
hypothetical protein
Tax=RBG_13_Spirochaetes_51_14_curated
berkeley_reactor_200306_planktonic_scaffold_59817_454
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(517629..518171)
DNA (543bp) protein (181aa)
ATP-dependent RNA helicase, DEAD/DEAH box family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0R0_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_455
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(518227..520272)
DNA (2046bp) protein (682aa)
adenylate cyclase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017463A4
Putative transmembrane sensor domain protein {ECO:0000313|EMBL:EIG54984.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
guanylate cyclase
berkeley_reactor_200306_planktonic_scaffold_59817_456
unknown

Not on your lists

520448..520702
DNA (255bp) protein (85aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_457
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

520699..521241
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AYL4_PSERE
Polyketide cyclase {ECO:0000313|EMBL:KHD33188.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_458
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

521274..521786
DNA (513bp) protein (171aa)
Gll3467 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NFQ7_GLOVI
hypothetical protein
Gll3467 protein {ECO:0000313|EMBL:BAC91408.1}; TaxID=251221 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
berkeley_reactor_200306_planktonic_scaffold_59817_459
unknown

Not on your lists

comp(521842..522438)
DNA (597bp) protein (199aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_460
unknown

Not on your lists

comp(522435..523106)
DNA (672bp) protein (224aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_461
unknown

Not on your lists

523209..524498
DNA (1290bp) protein (430aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_462
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

524502..525368
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017463A6
Uncharacterized protein {ECO:0000313|EMBL:EDY20807.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
iron dicitrate transport regulator FecR
berkeley_reactor_200306_planktonic_scaffold_59817_463
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

525533..526120
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZP3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20207.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_59817_464
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

526146..529850
DNA (3705bp) protein (1235aa)
Methionine synthase {ECO:0000313|EMBL:CBK41595.1}; EC=2.1.1.13 {ECO:0000313|EMBL:CBK41595.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
metH; methionine synthase (EC:2.1.1.13)
Methionine synthase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PED6_9BACT
berkeley_reactor_200306_planktonic_scaffold_59817_465
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

530174..530929
DNA (756bp) protein (252aa)
Por secretion system C-terminal sorting domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CQH4_9FLAO
Por secretion system C-terminal sorting domain containing protein {ECO:0000313|EMBL:EJL76196.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_466
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

530895..531668
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017455CC
prepilin-type N-terminal cleavage/methylation domain
Tax=GWF2_Planctomycetes_42_9_curated
berkeley_reactor_200306_planktonic_scaffold_59817_467
unknown

Not on your lists

comp(531832..532353)
DNA (522bp) protein (174aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_468
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

532406..533272
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017452CA
agmH; Lysophospholipase AgmH
Lysophospholipase AgmH {ECO:0000313|EMBL:ADO73181.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
berkeley_reactor_200306_planktonic_scaffold_59817_469
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

533434..534114
DNA (681bp) protein (227aa)
Glyoxalase {ECO:0000313|EMBL:KIF32375.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
hypothetical protein
bleomycin resistance protein id=12498233 bin=THIO_MID species=Alcanivorax sp. PN-3 genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
berkeley_reactor_200306_planktonic_scaffold_59817_470
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(534164..535399)
DNA (1236bp) protein (412aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form (EC:2.3.1.12)
Catalytic domain of component of various dehydrogenase complexes n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTW7_9BACT
berkeley_reactor_200306_planktonic_scaffold_59817_471
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(535438..536412)
DNA (975bp) protein (325aa)
Transketolase central region n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTW6_9BACT
Transketolase central region {ECO:0000313|EMBL:EDY22004.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
transketolase central region
berkeley_reactor_200306_planktonic_scaffold_59817_472
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(536459..537538)
DNA (1080bp) protein (360aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Pyruvate dehydrogenase (Acetyl-transferring) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTW5_9BACT
pyruvate dehydrogenase E1 component subunit alpha
berkeley_reactor_200306_planktonic_scaffold_59817_473
unknown

Not on your lists

537665..538276
DNA (612bp) protein (204aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_474
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(538264..539133)
DNA (870bp) protein (290aa)
ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FTR3_SORC5
ECF family RNA polymerase sigma factor
ECF-family RNA polymerase sigma factor {ECO:0000313|EMBL:CAN98557.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
berkeley_reactor_200306_planktonic_scaffold_59817_475
Leptolyngbya sp. Heron Island J, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(539141..539764)
DNA (624bp) protein (208aa)
[acyl-carrier-protein] phosphodiesterase (EC:3.1.4.14)
Fmn-dependent nadh-azoreductase n=1 Tax=Leptolyngbya sp. Heron Island J RepID=U9VRR0_9CYAN
Fmn-dependent nadh-azoreductase {ECO:0000313|EMBL:ESA35310.1}; TaxID=1385935 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. Heron Island J.;"
berkeley_reactor_200306_planktonic_scaffold_59817_476
Akkermansia muciniphila, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

539860..540549
DNA (690bp) protein (230aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Akkermansia muciniphila (strain ATCC BAA-835) RepID=B2UQB8_AKKM8
ErfK/YbiS/YcfS/YnhG family protein
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:ACD04653.1}; Flags: Precursor;; TaxID=349741 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia.;" source="Akkermansia muciniphila (strain ATCC BAA-835 / Muc).;"
berkeley_reactor_200306_planktonic_scaffold_59817_477
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(540535..541575)
DNA (1041bp) protein (347aa)
Radical SAM domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK44_9BACT
Radical SAM domain protein {ECO:0000313|EMBL:EEF59867.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA repair photolyase
berkeley_reactor_200306_planktonic_scaffold_59817_478
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(541582..542109)
DNA (528bp) protein (176aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Leptospira broomii serovar Hurstbridge str. 5399 RepID=T0FAQ0_9LEPT
peptide methionine sulfoxide reductase
Displaying items 451-480 of 558 in total

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