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berkeley_reactor_200306_planktonic_scaffold_59817

Search features with annotation key words

Displaying items 511-540 of 558 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_59817_509
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

576657..577349
DNA (693bp) protein (231aa)
Cell wall hydrolase/autolysin n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D457_9BACT
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:EDY18658.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
amiC; N-acetylmuramoyl-L-alanine amidase
berkeley_reactor_200306_planktonic_scaffold_59817_510
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(577360..578721)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D164_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20076.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_511
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

578799..580604
DNA (1806bp) protein (602aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003629531
resB; ResB protein required for cytochrome c biosynthesis
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_512
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(580601..581407)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0A8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20422.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_513
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(581404..582468)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI00036A0098
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase fused to PHP family phosphoesterase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_514
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(582505..583248)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8U7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17155.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_515
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(583245..584276)
DNA (1032bp) protein (344aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Methyltransferase type 11 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8U6_9BACT
Methyltransferase type 11 {ECO:0000313|EMBL:EDY17154.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_59817_516
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(584280..585065)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017448BB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83548.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_59817_517
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(585062..585391)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017448BC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAR35697.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
berkeley_reactor_200306_planktonic_scaffold_59817_518
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(585375..586604)
DNA (1230bp) protein (410aa)
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8U2_9BACT
cyclopropane fatty acid synthase-related methyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_519
unknown

Not on your lists

comp(586658..587890)
DNA (1233bp) protein (411aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_520
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(587990..588901)
DNA (912bp) protein (304aa)
YceI family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7W7_9BACT
Sulfurtransferase {ECO:0000313|EMBL:KIE42969.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_521
Paenibacillus dendritiformis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(588947..591559)
DNA (2613bp) protein (871aa)
Ankyrin n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SHV1_9BACL
Ankyrin {ECO:0000313|EMBL:EHQ61346.1}; TaxID=1131935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus dendritiformis C454.;"
ankyrin
berkeley_reactor_200306_planktonic_scaffold_59817_522
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(591708..593582)
DNA (1875bp) protein (625aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSR8_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF57120.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_59817_523
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

593711..594271
DNA (561bp) protein (187aa)
phosphohydrolase n=1 Tax=Halomonas sp. KM-1 RepID=UPI000288B8ED
Phosphohydrolase {ECO:0000313|EMBL:EPC03233.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein
berkeley_reactor_200306_planktonic_scaffold_59817_524
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(594268..595041)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8U1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17149.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_525
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(595038..596306)
DNA (1269bp) protein (423aa)
Amine oxidase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8U0_9BACT
NADP transhydrogenase subunit alpha
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
berkeley_reactor_200306_planktonic_scaffold_59817_526
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(596303..597253)
DNA (951bp) protein (317aa)
stearoyl-CoA 9-desaturase (EC:1.14.19.1)
Fatty acid desaturase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8T9_9BACT
Fatty acid desaturase {ECO:0000313|EMBL:EDY17147.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_59817_527
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(597302..598201)
DNA (900bp) protein (300aa)
ParB-like partition protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYR2_9BACT
ParB-like partition protein {ECO:0000313|EMBL:EDY20603.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
parB-like partition protein
berkeley_reactor_200306_planktonic_scaffold_59817_528
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

598379..598990
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036526C0
Lipoate-protein ligase A-like protein {ECO:0000313|EMBL:CDD93097.1}; TaxID=1262691 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia sp. CAG:344.;"
Lipoate-protein ligase A-like protein
berkeley_reactor_200306_planktonic_scaffold_59817_529
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

599039..601123
DNA (2085bp) protein (695aa)
Polyphosphate kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMF2_9BACT
polyphosphate kinase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_530
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

601120..601716
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVN5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21477.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_531
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(601720..603096)
DNA (1377bp) protein (459aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Dihydrolipoyl dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9V8_9BACT
dihydrolipoamide dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_59817_532
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

603195..604130
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FRA2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EDM71320.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. AzwK-3b.;"
putative phosphohydrolase
berkeley_reactor_200306_planktonic_scaffold_59817_533
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(604106..605062)
DNA (957bp) protein (319aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0C7_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
berkeley_reactor_200306_planktonic_scaffold_59817_534
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(605059..605985)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029A797C
Uncharacterized protein {ECO:0000313|EMBL:KIA92427.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
berkeley_reactor_200306_planktonic_scaffold_59817_535
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(605982..606392)
DNA (411bp) protein (137aa)
membrane protein n=1 Tax=Streptomyces sp. FxanaD5 RepID=UPI0003786DC6
Integral membrane protein {ECO:0000313|EMBL:EFL34416.1}; TaxID=591159 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes DSM 40736.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_536
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(606441..606974)
DNA (534bp) protein (178aa)
Transcriptional regulators-like protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0C4_9BACT
Transcriptional regulators-like protein {ECO:0000313|EMBL:EDY20438.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_59817_537
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(607348..608235)
DNA (888bp) protein (296aa)
LysR family transcriptional regulator n=1 Tax=Burkholderia sp. JPY251 RepID=UPI00036C285B
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADG18771.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
berkeley_reactor_200306_planktonic_scaffold_59817_538
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

608307..609560
DNA (1254bp) protein (418aa)
Fucose permease n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKJ9_SINAD
fucose permease
Fucose permease {ECO:0000313|EMBL:AGA29358.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying items 511-540 of 558 in total

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