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berkeley_reactor_200306_planktonic_scaffold_59817

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Displaying items 421-450 of 558 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_59817_419
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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476453..477832
DNA (1380bp) protein (460aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2A7_9BACT
berkeley_reactor_200306_planktonic_scaffold_59817_420
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(477892..479301)
DNA (1410bp) protein (470aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX98_9BACT
NAD(P)(+) transhydrogenase
berkeley_reactor_200306_planktonic_scaffold_59817_421
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(479298..479579)
DNA (282bp) protein (94aa)
Pyridine nucleotide transhydrogenase subunit alpha n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX99_9BACT
Pyridine nucleotide transhydrogenase subunit alpha {ECO:0000313|EMBL:EDY20897.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
NAD(P) transhydrogenase subunit alpha
berkeley_reactor_200306_planktonic_scaffold_59817_422
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(479582..480706)
DNA (1125bp) protein (375aa)
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:KGM44159.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
NAD(P) transhydrogenase subunit alpha id=3968021 bin=GWF2_Lentisphaerae_57_35 species=Simiduia agarivorans genus=Simiduia taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
NAD(P) transhydrogenase subunit alpha
berkeley_reactor_200306_planktonic_scaffold_59817_423
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

480971..482365
DNA (1395bp) protein (465aa)
beta-glucosidase (EC:3.2.1.21)
Beta-glucosidase n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E1X9_DICTD
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_424
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

482397..483029
DNA (633bp) protein (211aa)
Paraquat-inducible protein A n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LSP5_9PROT
PqiA family integral membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_425
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

483026..483520
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI00031CADC5
PqiA family integral membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_426
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

483517..485757
DNA (2241bp) protein (747aa)
hypothetical protein n=1 Tax=Pseudomonas nitroreducens RepID=UPI0002F4C814
Mammalian cell entry protein {ECO:0000313|EMBL:KJK01237.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_427
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(485768..488158)
DNA (2391bp) protein (797aa)
PAS domain S-box n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DH59_SINAD
PAS domain-containing protein
PAS domain S-box {ECO:0000313|EMBL:AGA28190.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_59817_428
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

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comp(488222..489769)
DNA (1548bp) protein (516aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
Adenylosuccinate synthetase n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EKE6_CORAD
adenylosuccinate synthetase
berkeley_reactor_200306_planktonic_scaffold_59817_429
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(489925..491487)
DNA (1563bp) protein (521aa)
IMP dehydrogenase {ECO:0000313|EMBL:ADE54894.1}; EC=1.1.1.205 {ECO:0000313|EMBL:ADE54894.1};; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
IMP dehydrogenase n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EKE5_CORAD
IMP dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_59817_430
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(491658..493847)
DNA (2190bp) protein (730aa)
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRA1_OPITP
short-chain dehydrogenase
Short-chain dehydrogenase {ECO:0000313|EMBL:AKC82813.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_59817_431
Paenibacillus sp. HGF7, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

493935..494693
DNA (759bp) protein (253aa)
Transcriptional regulator, DeoR family n=2 Tax=Paenibacillus RepID=F5LT99_9BACL
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EGL13309.1}; TaxID=944559 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. HGF7.;"
DeoR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_59817_432
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

494712..496187
DNA (1476bp) protein (492aa)
carbohydrate kinase; K00848 rhamnulokinase [EC:2.7.1.5] id=16802481 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP66538.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
carbohydrate kinase
berkeley_reactor_200306_planktonic_scaffold_59817_433
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

496190..496948
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZS06_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74682.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_59817_434
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

496951..498357
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZS05_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74681.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_59817_435
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

498354..498962
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZS04_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74680.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_59817_436
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

498981..500228
DNA (1248bp) protein (416aa)
rhamnose isomerase (EC:5.3.1.14)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
L-rhamnose isomerase n=2 Tax=unclassified Opitutaceae RepID=H1IZS0_9BACT
berkeley_reactor_200306_planktonic_scaffold_59817_437
unknown

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500455..500886
DNA (432bp) protein (144aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_438
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

501364..502047
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0C9_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
berkeley_reactor_200306_planktonic_scaffold_59817_439
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(502689..503927)
DNA (1239bp) protein (413aa)
dapL; LL-diaminopimelate aminotransferase (EC:2.6.1.83)
Aminotransferase class I and II n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY42_9BACT
Aminotransferase class I and II {ECO:0000313|EMBL:EDY21190.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_59817_440
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(503984..504520)
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNA0_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EDY80826.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_59817_441
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(504530..505312)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036C498E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB76400.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_59817_442
unknown

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505457..505984
DNA (528bp) protein (176aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_443
unknown

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506050..506532
DNA (483bp) protein (161aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_59817_444
Tetragenococcus halophilus, Tetragenococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(506600..507037)
DNA (438bp) protein (146aa)
glyoxalase n=1 Tax=Gracilibacillus lacisalsi RepID=UPI000370899F
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK95568.1}; TaxID=945021 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Tetragenococcus.;" source="Tetragenococcus halophilus (strain DSM 20338 / JCM 20259 / NCIMB 9735; / NBRC 12172) (Pediococcus halophilus).;"
berkeley_reactor_200306_planktonic_scaffold_59817_445
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(507093..508403)
DNA (1311bp) protein (437aa)
Peptidase M56 BlaR1 n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IW24_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94901.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_59817_446
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(508387..508758)
DNA (372bp) protein (124aa)
Transcriptional repressor, CopY family n=1 Tax=Paenibacillus lactis 154 RepID=G4HKZ5_9BACL
Transcriptional repressor, CopY family {ECO:0000313|EMBL:EHB57449.1}; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis 154.;"
blaI; BlaI family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_59817_447
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(508860..510515)
DNA (1656bp) protein (552aa)
Serine hydroxymethyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3W9_9BACT
glyA; protein-tyrosine-phosphatase, ribose 5-phosphate isomerase and glycine/serine hydroxymethyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_59817_448
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

510701..511675
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3X8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18958.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Displaying items 421-450 of 558 in total

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