ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_122971_1446

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: comp(1643959..1645170)

Top 3 Functional Annotations

Value Algorithm Source
Radical SAM domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TX79_9CHLR similarity UNIREF
DB: UNIREF100
  • Identity: 56.5
  • Coverage: 391.0
  • Bit_score: 473
  • Evalue 2.10e-130
syrB; transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 56.1
  • Coverage: 396.0
  • Bit_score: 466
  • Evalue 7.10e-129
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 56.0
  • Coverage: 414.0
  • Bit_score: 485
  • Evalue 7.40e-134

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Verrucomicrobia_64_8 → Opitutae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1212
GTGAAGAGTGAGTTGTTGCCAGCGCCGGCCTCGGTCCCGAGGCGGCCCCGTGCATTTCATGTGATGGCCAAGCCCTTCGGGGCGATCTGCAACCTGGAATGTTCCTACTGCTATTACCTGGGCAAAAAGGAGATGTATCCGGCCTCGGAGAGCTTTCGCATGTCCGATCCTGTGCTGGACCAGTACATCCGGCAATACATCGACTCGCAGGATACGGAGGAGGTCACATTTGTCTGGCAGGGCGGAGAGCCGACCCTCCTCGGCCTGGGCTTCTTTGAAAAAGCGCTGGAGTTGCAGGCCCGCTACGGTCACGGGCGCAAGATCAGCAACTCGCTCCAGACCAACGGGACAAATCTCACCGATGAATGGTGCGAGTTTTTCCACCGACACCATTTTCTCATCGGGGTGAGCATTGATGGACCGCGCAAGATCCACGACCGCTACCGTCTCGACAAAAAACAGCAGCCGACTTTTGACCGTGTGGTCAACGGCATCGCGCTGCTGAAAAAGCACAAGGTCGAGTTCAATACGCTCACGGTGGTGAACCGCACGAACGCCGCGCAGCCGCTCGATGTCTACCGCTTCCTGAAGCGGCTGGGTTCGCGTTATTTGCAGTTCATCCCCATCGTCGAGATCGATCACCAACGATCGACGCCGGGCCGCACGGTGGTGACCCAGGAGAGCGTGGAGCCGCGTCAGTTCGGCGAGTTTCTCATCCGCATCTTCGACGAGTGGGTGCGCCACGATGTCGGGCAGACGTTCGTCCAGCTGTTCGACAACACGCTTAGCCGTCACATGGGCCTGCCATCGACGGTATGTGCCTTTGGGGAAACCTGTGGCGAGGCCATGGCCATCGAGCACAATGGCGATGTCTTCAGTTGCGACCACTTCGTTTATCCCGAGTACCGGCTTGGCAACATCATGGAGACGCCGCTTGCCGATATCGCGCTCTCGGAGCGGCAGAGAGAGTTTGGCCGGATGAAGAAGGACGGGCTGCCGAAGTATTGCCGCGAGTGCCATGTGCTTTTTGCCTGCAACGGGGAATGCCCGAAGCATCGCTTCCTCAAGACGCACGATGGCGAGGAGGGGCTGAATTACCTCTGCACCGCTTATCAGCGGTTTTTCCACCACACCGATCCCTACATGAAGACGATGTCCCACCTGCTGCATCGCGGCAGGCCGGCCTCGGATGTCATGCGGCTGGCGAACTGA
PROTEIN sequence
Length: 404
VKSELLPAPASVPRRPRAFHVMAKPFGAICNLECSYCYYLGKKEMYPASESFRMSDPVLDQYIRQYIDSQDTEEVTFVWQGGEPTLLGLGFFEKALELQARYGHGRKISNSLQTNGTNLTDEWCEFFHRHHFLIGVSIDGPRKIHDRYRLDKKQQPTFDRVVNGIALLKKHKVEFNTLTVVNRTNAAQPLDVYRFLKRLGSRYLQFIPIVEIDHQRSTPGRTVVTQESVEPRQFGEFLIRIFDEWVRHDVGQTFVQLFDNTLSRHMGLPSTVCAFGETCGEAMAIEHNGDVFSCDHFVYPEYRLGNIMETPLADIALSERQREFGRMKKDGLPKYCRECHVLFACNGECPKHRFLKTHDGEEGLNYLCTAYQRFFHHTDPYMKTMSHLLHRGRPASDVMRLAN*