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berkeley_reactor_200306_planktonic_scaffold_122971

Search features with annotation key words

Displaying items 1-30 of 1489 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_122971_1
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(2..2404)
DNA (2403bp) protein (801aa)
id=4436685 bin=GWF2_Lentisphaerae_49_21 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_122971_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(2409..4373)
DNA (1965bp) protein (655aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACB8_GEMAT
hypothetical membrane protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
berkeley_reactor_200306_planktonic_scaffold_122971_3
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(4370..5314)
DNA (945bp) protein (315aa)
hypothetical protein SpalD1_13717 id=4436678 bin=GWF2_Lentisphaerae_49_21 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_122971_4
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(5321..6337)
DNA (1017bp) protein (339aa)
ATPase id=4436676 bin=GWF2_Lentisphaerae_49_21 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
ATPase
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_122971_5
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(6350..8947)
DNA (2598bp) protein (866aa)
Tetratricopeptide repeat domain protein id=4436674 bin=GWF2_Lentisphaerae_49_21 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
transglutaminase domain-containing protein
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_122971_6
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(9266..11071)
DNA (1806bp) protein (602aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IV54_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF91454.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_122971_7
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(11107..11451)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AXC3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EIP99664.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_122971_8
GWF1_Spirochaetes_41_5_curated, Spirochaetes, Bacteria

Not on your lists

comp(11455..12201)
DNA (747bp) protein (249aa)
PEGA domain family protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KNH1_9GAMM
sulfatase-modifying factor protein
Tax=GWF1_Spirochaetes_41_5_curated
berkeley_reactor_200306_planktonic_scaffold_122971_9
unknown

Not on your lists

comp(12347..14032)
DNA (1686bp) protein (562aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_122971_10
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(14025..16295)
DNA (2271bp) protein (757aa)
Uncharacterized protein (Fragment) n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RRE3_LEIAQ
Glycosyl hydrolase family 71
Tax=CG_Arma_01
berkeley_reactor_200306_planktonic_scaffold_122971_11
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(16316..18337)
DNA (2022bp) protein (674aa)
hypothetical protein n=1 Tax=Paenibacillus sp. JC66 RepID=UPI000289CEEC
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_122971_12
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(18357..19088)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B4899F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF91044.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_122971_13
unknown

Not on your lists

comp(19098..19853)
DNA (756bp) protein (252aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_122971_14
unknown

Not on your lists

comp(19873..20883)
DNA (1011bp) protein (337aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_122971_15
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

21071..22126
DNA (1056bp) protein (352aa)
Transcriptional regulator, LacI family n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1ISV5_9BACT
LacI family transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:AHF91071.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_122971_trna_20
unknown

Not on your lists

comp(22405..22478)
DNA (74bp)
transferRNA Pro
berkeley_reactor_200306_planktonic_scaffold_122971_16
unknown

Not on your lists

22593..23138
DNA (546bp) protein (182aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_122971_17
Akkermansia muciniphila, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

23216..23941
DNA (726bp) protein (242aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=349741 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia.;" source="Akkermansia muciniphila (strain ATCC BAA-835 / Muc).;"
Ribonuclease PH n=1 Tax=Akkermansia muciniphila (strain ATCC BAA-835) RepID=B2UNC2_AKKM8
ribonuclease PH
berkeley_reactor_200306_planktonic_scaffold_122971_18
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

23938..24924
DNA (987bp) protein (329aa)
GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
GDP-mannose 4,6-dehydratase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JN46_9BACT
berkeley_reactor_200306_planktonic_scaffold_122971_19
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


24970..25236
DNA (267bp) protein (89aa)
50S ribosomal protein L28 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1U7_9BACT
rpmB; 50S ribosomal protein L28
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_122971_20
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(25344..26138)
DNA (795bp) protein (265aa)
Tyrosine recombinase XerC n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7L5_9BACT
tyrosine recombinase XerC
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_122971_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(26264..27886)
DNA (1623bp) protein (541aa)
Rho termination factor, N-terminal domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7L6_9BACT
Rho termination factor, N-terminal domain protein {ECO:0000313|EMBL:EDY17633.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Rho termination factor domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_122971_22

Not on your lists

28032..29477
DNA (1446bp) protein (482aa)
2-alkenal reductase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3B1_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48359.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_122971_23
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

29513..30139
DNA (627bp) protein (209aa)
Putative transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D697_9BACT
Putative transcriptional regulator {ECO:0000313|EMBL:EDY18006.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ArsR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_122971_24
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

30171..30722
DNA (552bp) protein (184aa)
flavoprotein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A8D
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ADE54064.1}; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
berkeley_reactor_200306_planktonic_scaffold_122971_25
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

30775..32760
DNA (1986bp) protein (662aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
Transketolase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JRD8_9BACT
transketolase
berkeley_reactor_200306_planktonic_scaffold_122971_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

32808..33539
DNA (732bp) protein (244aa)
Phosphoadenylyl-sulfate reductase (thioredoxin) {ECO:0000256|SAAS:SAAS00089161}; EC=1.8.4.8 {ECO:0000256|SAAS:SAAS00089161};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phosphoadenylylsulfate reductase (EC:1.8.4.8)
Phosphoadenylyl-sulfate reductase (Thioredoxin) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLS6_9BACT
berkeley_reactor_200306_planktonic_scaffold_122971_27
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33546..34385)
DNA (840bp) protein (280aa)
metallophosphoesterase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5121
putative phosphohydrolase
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
berkeley_reactor_200306_planktonic_scaffold_122971_28
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

34416..35435
DNA (1020bp) protein (340aa)
Permease n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3I6_9BACT
Permease {ECO:0000313|EMBL:EDY18816.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ycgR; permease
berkeley_reactor_200306_planktonic_scaffold_122971_29
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

35432..36238
DNA (807bp) protein (269aa)
Membrane protein-like protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3I5_9BACT
Membrane protein-like protein {ECO:0000313|EMBL:EDY18815.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
TIGR03943 family protein
Displaying items 1-30 of 1489 in total

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