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berkeley_reactor_200306_planktonic_scaffold_122971

Search features with annotation key words

Displaying items 1471-1489 of 1489 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_122971_1451
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(1649013..1653146)
DNA (4134bp) protein (1378aa)
class II chitinase (EC:3.2.1.14)
Endoglucanase Y n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C7P4_9PLAN
Endoglucanase Y {ECO:0000313|EMBL:EDL59167.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
berkeley_reactor_200306_planktonic_scaffold_122971_1452
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1653223..1654362
DNA (1140bp) protein (380aa)
Putative two-component sensor histidine kinase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I0V2_AZOC5
two-component sensor histidine kinase
Putative two-component sensor histidine kinase {ECO:0000313|EMBL:BAF87298.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_planktonic_scaffold_122971_1453
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1654439..1655251
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003766250
LytTR family two component transcriptional regulator
Putative two-component response regulator protein {ECO:0000313|EMBL:CDH83351.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
berkeley_reactor_200306_planktonic_scaffold_122971_1454
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(1655286..1656983)
DNA (1698bp) protein (566aa)
Histidine kinase {ECO:0000313|EMBL:EDY16588.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EDY16588.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAC7_9BACT
PAS/PAC sensor hybrid histidine kinase
berkeley_reactor_200306_planktonic_scaffold_122971_1455
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(1656980..1657357)
DNA (378bp) protein (126aa)
KaiB domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAC6_9BACT
KaiB domain protein {ECO:0000313|EMBL:EDY16587.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
KaiB domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_122971_1456
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

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comp(1657395..1657736)
DNA (342bp) protein (114aa)
KaiB-like protein 1 n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YH24_9DELT
KaiB domain-containing protein
Tax=GWC2_Nitrospirae_57_9_curated
berkeley_reactor_200306_planktonic_scaffold_122971_1457
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(1657733..1659457)
DNA (1725bp) protein (575aa)
Putative circadian clock protein, KaiC {ECO:0000313|EMBL:EDY16584.1}; EC=2.7.11.1 {ECO:0000313|EMBL:EDY16584.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
putative circadian clock protein KaiC (EC:2.7.11.1)
Putative circadian clock protein, KaiC n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAC3_9BACT
berkeley_reactor_200306_planktonic_scaffold_122971_1458
unknown

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1659806..1660471
DNA (666bp) protein (222aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_122971_1459
unknown

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1660437..1661882
DNA (1446bp) protein (482aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_122971_1460

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comp(1662110..1662541)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A63
Uncharacterized protein {ECO:0000313|EMBL:KKU68552.1}; TaxID=1618842 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_16.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_122971_1461
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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1662646..1663239
DNA (594bp) protein (198aa)
transcriptional regulator, TetR family protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A64
regulatory protein TetR
Tax=RBG_16_Gammaproteobacteria_66_13_curated
berkeley_reactor_200306_planktonic_scaffold_122971_1462
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria

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1663518..1666376
DNA (2859bp) protein (953aa)
Family 5 glycosyl hydrolase n=1 Tax=uncultured bacterium RepID=K2E0D2_9BACT
hypothetical protein
Tax=RIFOXYA2_FULL_Melainabacteria_32_9_curated
berkeley_reactor_200306_planktonic_scaffold_122971_1463
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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1666512..1667735
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQ28_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77747.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_122971_1464
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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1667732..1668286
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQ29_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77748.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_122971_1465
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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1668283..1670229
DNA (1947bp) protein (649aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQ30_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77749.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_122971_1466
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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1670326..1672902
DNA (2577bp) protein (859aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Valine--tRNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNG0_9BACT
valyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_122971_1467
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

1673703..1674749
DNA (1047bp) protein (349aa)
mannose-1-phosphate guanylyltransferase (GDP) (EC:2.7.7.22)
Mannose-1-phosphate guanylyltransferase (GDP) {ECO:0000313|EMBL:ACB77081.1}; EC=2.7.7.22 {ECO:0000313|EMBL:ACB77081.1};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Mannose-1-phosphate guanylyltransferase (GDP) n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZYI3_OPITP
berkeley_reactor_200306_planktonic_scaffold_122971_1468
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1674995..1675705
DNA (711bp) protein (237aa)
putative O-methyltransferase
Putative O-methyltransferase {ECO:0000313|EMBL:BAP56745.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
berkeley_reactor_200306_planktonic_scaffold_122971_1469
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(1676333..1676713)
DNA (381bp) protein (127aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
Putative beta-galactosidase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0M6_CALAS
putative beta-galactosidase
Displaying items 1471-1489 of 1489 in total

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