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berkeley_reactor_200306_planktonic_scaffold_122971_1461

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: 1662646..1663239

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator, TetR family protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A64 similarity UNIREF
DB: UNIREF100
  • Identity: 47.1
  • Coverage: 170.0
  • Bit_score: 149
  • Evalue 3.30e-33
regulatory protein TetR similarity KEGG
DB: KEGG
  • Identity: 39.5
  • Coverage: 190.0
  • Bit_score: 134
  • Evalue 1.80e-29
Tax=RBG_16_Gammaproteobacteria_66_13_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 41.4
  • Coverage: 198.0
  • Bit_score: 137
  • Evalue 1.10e-29

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Taxonomy

RBG_16_Gammaproteobacteria_66_13_curated → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 594
ATGGAGACGGAAGGCGCCTGCAACCTCGACCCTCGCGTGAAACGCACGCGGGAGATGCTGCTCCGCGCCTTTGAGGAGCTGTTGGGTACAAAATCCTTGCAAGCCATTTCCGTGCAGGATATTGCGGAGCGGTCCACCCTGAACCGCGCGACCTTTTACGACCACTACACGGACAAATTCGCTCTCTTTCAGGACCTGATCGGGGAGAAATTTCGCAGCGCCTTCATGACGCGCATGGCGGAACGTCCCGCCCAGTGCCCGCATGGCATTCGCGCGCTCATCGAGACGGTTTGCGATTTTCTGGCCGGATTTCCCTCCCGCTGTCAGGAGTTCCAGCGCCAGGCCGGGCCGTTGATCGAATCCACCATCCGCGAGCGTTTGCGCGAATTCCTCGTCGCCGGGGCGCTGCGCGACTGCCCGGAGCGCGACCGCACCAATGCCGAGCTGCGCGCCACCCTCGCCGCCTGGGCCATCTGCGGCGCGGCCACGGAATGGCAGCGCCACAACGCCCAGAGCCGCGACGAATTCGTCGACGCCGTGCTCCCGATCGTCCTGCCCATCATGGGCCTGTACGCCTCCCACGCGGAGGCGTAG
PROTEIN sequence
Length: 198
METEGACNLDPRVKRTREMLLRAFEELLGTKSLQAISVQDIAERSTLNRATFYDHYTDKFALFQDLIGEKFRSAFMTRMAERPAQCPHGIRALIETVCDFLAGFPSRCQEFQRQAGPLIESTIRERLREFLVAGALRDCPERDRTNAELRATLAAWAICGAATEWQRHNAQSRDEFVDAVLPIVLPIMGLYASHAEA*