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berkeley_reactor_200306_planktonic_scaffold_333344_24

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: 22144..23682

Top 3 Functional Annotations

Value Algorithm Source
ligD; ATP-dependent DNA ligase (EC:6.5.1.1) similarity KEGG
DB: KEGG
  • Identity: 45.0
  • Coverage: 522.0
  • Bit_score: 416
  • Evalue 8.20e-114
DNA polymerase LigD, ligase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5X0_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 56.0
  • Coverage: 529.0
  • Bit_score: 579
  • Evalue 2.60e-162
DNA polymerase LigD, ligase domain protein {ECO:0000313|EMBL:EDY18173.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.0
  • Coverage: 529.0
  • Bit_score: 579
  • Evalue 3.60e-162

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Taxonomy

Chthoniobacter flavus → Chthoniobacter → Spartobacteria → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1539
ATGTCGCTGAAGACCTACCATAGTAAACGAAACAACCGAAAAACTCCCGAGCCATGGAAGGATGATGGAAATGCTGCCGACAGAACATTTGTCGTGCAGAAACATGCGGCATCGCGACTGCACTATGACTTCCGCCTCGAGATGGGGGGAGTGCTGAAATCGTGGGCTCTGCCCAAAGGGCTTCCTTTCAAGCACGGCGAAAAGCATCTCGCTGTACACGTGGAGGATCATCCACGGTCCTACGGCAATTTTGAGGGTACGATCCCCAAAGGCCAGTACGGCGGAGGTACAGTGATGCTTTGGGATCGGGGAACTTATAAACCGATGACTCGGTCTCCGCTAAAGGATCTGGAGGCGGGAAAGCTCCATGTCGAGCTTCGGGGAGAGAAACTCTCGGGCGAATGGGCCCTGGTTCGGATGCGTGGGATGGGAGACGACTGGCTTATCATTCGCAGTGACGAGGATTTGCGCCCGGTTTCCGCGCGCGCAGACGATTGTTCGGTGAAAACTGGCTGCACCATGAAGCAGCTCGAGAGCGGGGGCAGAAAGCGGCCGGCATCCGGGAGAGTGAGGGCGCCATCCGGGGAGAAAGGGGAATATCCTCCTTTCATTGAGGTGATGAAGGCTCTGACTGTCGAACACCCTCCGGCAGGCGATTGGTTTTACGAGATCAAGTTCGATGGCTGGCGGGCGCTGGCATTATGCGGACCTGAGAGGGTGAAAATCATGTCGAGAAACCACAAGGATATGACGGATCTTTTCCCGGATGTGTCTGGAGCCCTCGAGACTCTGGACCTTCGCGATTCCATTCTGGATGGGGAAATCGTGGCGCTTGATTCGCAGGGAAGATCATCTTTTCAACTTCTCCAGGCTTATCGATTGGCTACCGAGAGCCCGGCGTTGTTCTATTATGTTTTCGACCTTCCGAGGTACAAGGGAAGGGACCTGCGAGATCGCCCCGTTGAGGTGCGCAAGGAGATACTGCGGGAGATAATTCCCGGCGCTGGGGAGGTGGTTCGCTTCTCGGACTCGCTCGGGAGCAACTATCGCAAGCTGCGCAGTCACGCCAAAGCACTCAACCTGGAAGGGTTGATTGGAAAGCGTAGCGACTCTCTCTATGAAAGCGGTCGGAGGAGCGGCGCGTGGATCAAGATCAAAATCGTCCACGAGCAGGAGATGGTCATCGCGGGGTATACCGACCCCAAGGGAAGCCGGAGCGGCTTTGGTGCGATCCTCCTGGGGTACTATAAACAAGGCAGGCTGATCTCGGCGGGCAAGGTGGGTACAGGCTTCAGCGACGCCCTGCTGGATTCCCTTTCTGCGCGCTTTCGTCGGATGTCGCGTGGGACGATGCCTTATGCCGATGCGAAAAATCTTACTCCGGCAGAGCTTCGGTCTGCACACTGGGTGAAGCCGGAGCTGGTGGCTCAAGTTCGGTTCAAGGAGTGGACCAGCGATGGGCGTTTGCGGCAGCCTGTTTTTCTCGGGCTGCGGGAAGACAAGTCGCCGAGGGATGTTGTGCGGGAGGATATCGGGTGA
PROTEIN sequence
Length: 513
MSLKTYHSKRNNRKTPEPWKDDGNAADRTFVVQKHAASRLHYDFRLEMGGVLKSWALPKGLPFKHGEKHLAVHVEDHPRSYGNFEGTIPKGQYGGGTVMLWDRGTYKPMTRSPLKDLEAGKLHVELRGEKLSGEWALVRMRGMGDDWLIIRSDEDLRPVSARADDCSVKTGCTMKQLESGGRKRPASGRVRAPSGEKGEYPPFIEVMKALTVEHPPAGDWFYEIKFDGWRALALCGPERVKIMSRNHKDMTDLFPDVSGALETLDLRDSILDGEIVALDSQGRSSFQLLQAYRLATESPALFYYVFDLPRYKGRDLRDRPVEVRKEILREIIPGAGEVVRFSDSLGSNYRKLRSHAKALNLEGLIGKRSDSLYESGRRSGAWIKIKIVHEQEMVIAGYTDPKGSRSGFGAILLGYYKQGRLISAGKVGTGFSDALLDSLSARFRRMSRGTMPYADAKNLTPAELRSAHWVKPELVAQVRFKEWTSDGRLRQPVFLGLREDKSPRDVVREDIG*