ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_333344_66

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: comp(64699..68211)

Top 3 Functional Annotations

Value Algorithm Source
ABC-type multidrug transport system, ATPase component n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745643 similarity UNIREF
DB: UNIREF100
  • Identity: 50.0
  • Coverage: 1129.0
  • Bit_score: 1119
  • Evalue 0.0
ABC transporter similarity KEGG
DB: KEGG
  • Identity: 28.9
  • Coverage: 1116.0
  • Bit_score: 531
  • Evalue 3.10e-148
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 66.8
  • Coverage: 1173.0
  • Bit_score: 1562
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RHI_Verrucumicrobia_41_10 → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 3513
ATGTTTCGTCGCCTCTCCGGAAAGCCGCGCACCGTTGCGGAAAGTCCCAATCTTCTGCCGACCCTCATCAAGGTCTTTGCCGCCTTTGCCCGCGTCGATGGCGAGATCCTGGAAGAGGAAATCGACTCCAGCCTCGGCTTCCTGCGCTACGATTACCCGGATGCCGTGTACTCGGAGCTGCGCAAGCTCTTCCGCGATGCACTGCACGAGCAGCAGGATCTCAATGCCATCGCGCAGAAACTCAGCGCGGAACTCGATGACGAGCGCAAGATCCTCCTCGGCGTCCAGCTTTACGACCTGATCTCCAAGGCCGGCCTCAAGCAGGAGCAGGTCATCGCCTACTACTCCTTCATGTCGCAGCTCGGCATGGCGGCCCAGGCCATCGACATCGTCTACCAGCTCAATGCCAACGAGCAGGGCGACGCCGGGATTTACCACCAGGGAGCATCTCCCCTGGAGGCGGTGAGCTTCGGACCGCAGGGCAGCTGTGATGTGGCGCTGCGGGGCTTCCAGGACCACGAGCGCATCCTCGCTTATCGCTACAAGGAACTCGTCATCCTGAAGAACCTCAGCGGTCGCAACCTCATCGTGCAGGGTCGTGTCCTGAAAAACGGCGACCTTTGCCGCATCTTCACCGGACAGCGCATCCTGATCGACGACCAGGTCATCACCCACCAGGACCTTGTCTTTTATTTCAACGCCAAGAAAAACGTCGCCACGCCGCAGATCTTCGTCGCGGTGAACGAGGACGACGAAGTGCGGCTGGAGAAAAACCAATCCCGCGACTCCTGTCTCCAGGTCACCTTCGGTCTCGGCGTGAAGGTCACCGCGCTCAAGGACGTCGACGCCGTGCTGCGCGACGTCCGCCTCACGCAGGGCCGCACCGTCGACGCCACCCTGGAGGACAACATCATCTTCCACAACGACAGCGAGCTCGACCTCGGCGATCTCCGCCGCCGGGCGCGTCAATACGGCGGCCGTTTCCAGCTCAAGGCCTCCAAGAGCGAATACCTCGTCTCGAACAACCCCGGCCTGCTCCACGAGGACGACATCCTCCTTTCCGCCGGCACGGGCGGCGACGTGCTGCTGAAGATCTACTGCGACTACGATCGCAAGGAAGGCCGCGTCGAGGTGCTACAGGCCGACCGCCCCATCGTCGTGCGCGGCGTGCCGGTGCGCAACTACGCCACGCTGGCCGACGGCGACACCATCCGCATCGATGCGGGGCAGGTGCTGCGCTGCAACTTCACCGAACGGCTTATCGAGGAGGAGCGCAACATCGTGCGCAATCTCGAGGTGCGCGACCTCGTCTGCCGCTTCCGCAACAGCCAGGTCGCGCTCGATGGTATTTCCTTCTCCGTCCAGCGCGGCGAGATGGTCTGTGTGATGGGCGCGAGCGGCGCGGGCAAGAGCACGCTCATGCGCTCGCTCTCCGGCACCTTCGCCCCCGCCCAGGGCGACGTGCTTTTCAACGGACGCTCGCTGTACTCAAACAACGACCAGCTCCGCAAGTACGTCACCTACATCCCGCAGCACGACGCCTTTGACGAGCACCTCACCATCGAGGAAAACCTGAATTTCGCCGCCGCCCTCCGCGCGCCACACCTCTCCCGCCGCGAGCGCCTCCGCCGCATCGACAGCAAACTGGCGGAGCTCGGCCTGAACGAACGTCGCAACTACGTCGTCGGCGCCGCCCACAAGAAGACCCTCTCCGGCGGCGAGCGCAAGCGCCTCAATATCGGCCTCGACATGATCGGCTCGGCCGACGTGTACCTCTTTGACGAGCCCACCAGCGGCCTGTCGTCGAAGGACTCCGAGCATGTCATCGAGATCATTCGCGGCATGTCGCACAACAAGATCGTCCTCGTGACGATCCACCAGCCGACGTCGAAGATCTTCCAGATGTTCAACAAGGCCGTGCTGCTCGACCGCGGCGGCAAGCTGGTCTTTTTCGGCACTCCGCAGGAGATGCTAAAGTACTTCGCCGAGGCGGAGCACCAGCAGCACTTCGGCACCGAGATGGGCACCTGCGAGGCCTGCGGCACGACGCGACCGGAGTTTATCTTCGACGTACTGGAGACTCCGTTGCGCGATCTCTCCGGCGACATTATTTTCGAAGAGAACAACCGGGGCCAGCTTGTGCCAGCCCGCCGCTATTCCCCGGACTACTGGCGCGACAAGTACGAGGCATATCGCCTCATGAAGGACGTCCAGCAGACGACTCCGCCCAAGGACGCTTCACCGCAACTCCCATCGACCAGCGCCCGCCGTCGCGAGCCGATTCGCTGGCGCGAGGAATGGAGGCAGTTCGTCGTCCTCCTGAAACGCGCCTTCCTGAGCAAGATGCGCATGCCCGCCAACCTGCTCATGACGATCCTCGTCGCCCCTGCGCTGGCTCTGCTCATCGGCTTCGTGCTTCGCTACAACGAGAGCGGGCCGTACGATTTCTCCTCCGCCTACCACATCCCGACCTATCTCTTTCTGTCGCTGGTGGTTGCTATGTTCCTCGGCCTGACCAACAGCGTCGACGACATCCTGCGGGACCGACCCGTACTCCTTCGAGAACGCAACCTGAACGTGCGAATCGGCTATTACGTGGCGGGCAAGGCGCTCACCCTCTCCGTGTTTGCCCTCGTCCAGTGCGCCCTCTACACTTGGATCGGCGACGCGCTGCTCTCCGTGCGAGGCGTGTATTGGATCGTCTTCGTCGCGATGTTTCTCACCACTGTGAGCGGCGTGGCCATCGGCCTCGTCATCTCGTCGCTGGTGAATGAAAGCAAGACCGCCGTGCTCGTGATCCCCGCCGTGCTCATCCCGCAGATCATCCTCGCGGGCGCACTCATCAAGTACGAGGAGATGAACCGCAATCTCGACTTCGTCTATACGATCGAACAGTGGGCCACCCGTCACCCCGATGCGATGAGCTCCACCCGTAGCGATCTCCAGGTGCCGCTTATCTGCGAATTCATGCCGATGCGCTGGTCCTACGAGGCCCTCGTCTTCGCACAGGCCAAGCTCAATCCTCTCACCAGCCGCCAGGAGATCATTCAGAAACAGATCACCGAACTCGCCGCCAACAAGAACCTGACCGAACCTCAGGAGGATCGACTCGAAGACTTGAAGGATCTGCTCGCCATCGTCTCCGGCCTCCAGGGAAAGAATGCGAAGGATATCGATCGCAAACTCCGCGAAGTCGACAACGTCATTCGTGGCGGCCCACTCGACCGGGCAAAATTCCGCGGGCGCGAAAAGGGTGTCACCGCCGAACAGATCTATATCAACCAGAAGGTGACCGATCTCATTTCCAAGGCCGAGATGGAACAGACCGACTACCGCAATGACATGCCGGGACGCCGCCACCTGAATGTCTTCTTCGGCCCGGTGAAAGAGTACCTCGGTATCAAGGTCAACATGATCTGGTTCAACATCGGCGTGCTCACCCTCTCCACGCTGGTTCTGTTCTTCGCGCTTTTCCTCATCCTCAACCACCAAATCCGCACCCGTACGGTCTAG
PROTEIN sequence
Length: 1171
MFRRLSGKPRTVAESPNLLPTLIKVFAAFARVDGEILEEEIDSSLGFLRYDYPDAVYSELRKLFRDALHEQQDLNAIAQKLSAELDDERKILLGVQLYDLISKAGLKQEQVIAYYSFMSQLGMAAQAIDIVYQLNANEQGDAGIYHQGASPLEAVSFGPQGSCDVALRGFQDHERILAYRYKELVILKNLSGRNLIVQGRVLKNGDLCRIFTGQRILIDDQVITHQDLVFYFNAKKNVATPQIFVAVNEDDEVRLEKNQSRDSCLQVTFGLGVKVTALKDVDAVLRDVRLTQGRTVDATLEDNIIFHNDSELDLGDLRRRARQYGGRFQLKASKSEYLVSNNPGLLHEDDILLSAGTGGDVLLKIYCDYDRKEGRVEVLQADRPIVVRGVPVRNYATLADGDTIRIDAGQVLRCNFTERLIEEERNIVRNLEVRDLVCRFRNSQVALDGISFSVQRGEMVCVMGASGAGKSTLMRSLSGTFAPAQGDVLFNGRSLYSNNDQLRKYVTYIPQHDAFDEHLTIEENLNFAAALRAPHLSRRERLRRIDSKLAELGLNERRNYVVGAAHKKTLSGGERKRLNIGLDMIGSADVYLFDEPTSGLSSKDSEHVIEIIRGMSHNKIVLVTIHQPTSKIFQMFNKAVLLDRGGKLVFFGTPQEMLKYFAEAEHQQHFGTEMGTCEACGTTRPEFIFDVLETPLRDLSGDIIFEENNRGQLVPARRYSPDYWRDKYEAYRLMKDVQQTTPPKDASPQLPSTSARRREPIRWREEWRQFVVLLKRAFLSKMRMPANLLMTILVAPALALLIGFVLRYNESGPYDFSSAYHIPTYLFLSLVVAMFLGLTNSVDDILRDRPVLLRERNLNVRIGYYVAGKALTLSVFALVQCALYTWIGDALLSVRGVYWIVFVAMFLTTVSGVAIGLVISSLVNESKTAVLVIPAVLIPQIILAGALIKYEEMNRNLDFVYTIEQWATRHPDAMSSTRSDLQVPLICEFMPMRWSYEALVFAQAKLNPLTSRQEIIQKQITELAANKNLTEPQEDRLEDLKDLLAIVSGLQGKNAKDIDRKLREVDNVIRGGPLDRAKFRGREKGVTAEQIYINQKVTDLISKAEMEQTDYRNDMPGRRHLNVFFGPVKEYLGIKVNMIWFNIGVLTLSTLVLFFALFLILNHQIRTRTV*