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berkeley_reactor_200306_planktonic_scaffold_333344

Search features with annotation key words

Displaying items 61-90 of 490 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_333344_59
Maribacter sp. HTCC2170, Maribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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58087..58434
DNA (348bp) protein (116aa)
L-sorbosone dehydrogenase n=1 Tax=Maribacter sp. (strain HTCC2170 / KCCM 42371) RepID=A4AQX1_MARSH
L-sorbosone dehydrogenase
L-sorbosone dehydrogenase {ECO:0000313|EMBL:EAR01860.1}; TaxID=313603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter.;" source="Maribacter sp. (strain HTCC2170 / KCCM 42371).;"
berkeley_reactor_200306_planktonic_scaffold_333344_60
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(58438..59100)
DNA (663bp) protein (221aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IZX3_9BACT
N-terminal cleavage protein
N-terminal cleavage protein {ECO:0000313|EMBL:AHF89710.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_333344_61
Akkermansia muciniphila, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(59127..61685)
DNA (2559bp) protein (853aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=349741 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia.;" source="Akkermansia muciniphila (strain ATCC BAA-835 / Muc).;"
leucyl-tRNA synthetase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B77
leucyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_333344_62
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


61704..62327
DNA (624bp) protein (208aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI000376ACB9
Ham1 family protein
berkeley_reactor_200306_planktonic_scaffold_333344_63
unknown

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comp(62458..62907)
DNA (450bp) protein (150aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_64
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(62990..63877)
DNA (888bp) protein (296aa)
6-phosphogluconate dehydrogenase NAD-binding n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ05_9BACT
6-phosphogluconate dehydrogenase NAD-binding {ECO:0000313|EMBL:EEF58102.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
2-hydroxy-3-oxopropionate reductase
berkeley_reactor_200306_planktonic_scaffold_333344_65
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(63882..64694)
DNA (813bp) protein (271aa)
Beta-lactamase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0D6_9BACT
Beta-lactamase domain protein {ECO:0000313|EMBL:EDY19798.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
gloB; Zn-dependent hydrolase, glyoxylase family
berkeley_reactor_200306_planktonic_scaffold_333344_66
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(64699..68211)
DNA (3513bp) protein (1171aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745643
ABC transporter
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_67
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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68397..69464
DNA (1068bp) protein (356aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAV8_9BACT
aroG; phospho-2-dehydro-3-deoxyheptonate aldolase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_68
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

69461..70084
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI00036D83F8
Exonuclease RNase T and DNA polymerase III
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_69
Spirochaeta thermophila, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(70062..70586)
DNA (525bp) protein (175aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=665571 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1).;"
Predicted 5-formyltetrahydrofolatecyclo-ligase n=1 Tax=Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1) RepID=E0RNS6_SPITD
5-formyltetrahydrofolate cyclo-ligase
berkeley_reactor_200306_planktonic_scaffold_333344_70
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

70607..71524
DNA (918bp) protein (306aa)
Beta-lactamase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0W7_9BACT
Zn-dependent hydrolase of the beta-lactamase fold
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_71
Chlorobium phaeovibrioides, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

71589..71942
DNA (354bp) protein (118aa)
Protein translocase subunit yajC n=1 Tax=Prosthecochloris vibrioformis (strain DSM 265) RepID=A4SCN6_PROVI
protein translocase subunit yajC
Protein translocase subunit yajC {ECO:0000313|EMBL:ABP36245.1}; TaxID=290318 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Prosthecochloris vibrioformis (strain DSM 265) (Chlorobium vibrioforme; subsp. thiosulfatophilum (strain DSM 265)) (Chlorobium phaeovibrioides; (strain DSM 265)).;"
berkeley_reactor_200306_planktonic_scaffold_333344_72
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

71982..74309
DNA (2328bp) protein (776aa)
Protein-export membrane protein SecD n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5U8_9BACT
Protein-export membrane protein SecD {ECO:0000313|EMBL:EDY18151.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
secD; preprotein translocase subunit SecD
berkeley_reactor_200306_planktonic_scaffold_333344_73
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

74391..75053
DNA (663bp) protein (221aa)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase subfamily {ECO:0000313|EMBL:EDY83255.1}; EC=4.1.2.14 {ECO:0000313|EMBL:EDY83255.1};; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase subfamily n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JIB3_9BACT
2-dehydro-3-deoxyphosphogluconate aldolase
berkeley_reactor_200306_planktonic_scaffold_333344_74
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(75145..77949)
DNA (2805bp) protein (935aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|SAAS:SAAS00018769}; EC=4.1.1.31 {ECO:0000256|SAAS:SAAS00018769};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Phosphoenolpyruvate carboxylase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV72_9BACT
phosphoenolpyruvate carboxylase
berkeley_reactor_200306_planktonic_scaffold_333344_75
BJP_08E140C01_10KDA_Methylophilales_47_88, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(78018..79994)
DNA (1977bp) protein (659aa)
Type II secretory pathway component, protein D n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A7B
gspD; type II secretion system protein D
Tax=BJP_08E140C01_10KDA_Methylophilales_47_88
berkeley_reactor_200306_planktonic_scaffold_333344_76
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

81219..82988
DNA (1770bp) protein (590aa)
Autotransporter-associated beta strand repeat protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPN8_OPITP
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:ACB75491.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_333344_77
Brenneria sp. EniD312, Brenneria, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83046..84107
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A79
Twitching motility protein {ECO:0000313|EMBL:EHD20223.1}; TaxID=598467 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Brenneria.;" source="Brenneria sp. EniD312.;"
pilus retraction protein PilT
berkeley_reactor_200306_planktonic_scaffold_333344_78
unknown

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84104..84973
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A78
berkeley_reactor_200306_planktonic_scaffold_333344_79
unknown

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84973..85563
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A77
berkeley_reactor_200306_planktonic_scaffold_333344_80
unknown

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85560..86099
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A76
berkeley_reactor_200306_planktonic_scaffold_333344_81
unknown

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86096..86644
DNA (549bp) protein (183aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_82
unknown

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86712..87596
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A74
berkeley_reactor_200306_planktonic_scaffold_333344_83
unknown

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87593..88924
DNA (1332bp) protein (444aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_84
unknown

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88921..89310
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A72
berkeley_reactor_200306_planktonic_scaffold_333344_85
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

89313..90575
DNA (1263bp) protein (421aa)
Pilus tip-associated protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A71
type IV pilin
Tax=RBG_16_Zixibacteria_53_22_curated
berkeley_reactor_200306_planktonic_scaffold_333344_86
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

90575..93028
DNA (2454bp) protein (818aa)
Sensor histidine kinase id=3840672 bin=GWC2_Geobacteraceae_55_20 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
PAS domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
berkeley_reactor_200306_planktonic_scaffold_333344_87
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

93006..93668
DNA (663bp) protein (221aa)
Putative oxygen regulatory protein NreC n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A347_9PROT
Putative oxygen regulatory protein NreC {ECO:0000313|EMBL:EHL99477.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
two-component response regulator
berkeley_reactor_200306_planktonic_scaffold_333344_88

Not on your lists

93767..94156
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A70
Uncharacterized protein {ECO:0000313|EMBL:AHZ46163.1}; TaxID=1497524 species="Bacteria; environmental samples.;" source="uncultured bacterium 12-5D.;"
type IV pilin
Displaying items 61-90 of 490 in total

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