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berkeley_reactor_200306_planktonic_scaffold_333344

Search features with annotation key words

Displaying items 91-120 of 490 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_333344_89
RBG_16_Chloroflexi_58_8_curated, Chloroflexi, Bacteria

Not on your lists

94190..94618
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6F
Tax=RBG_16_Chloroflexi_58_8_curated
berkeley_reactor_200306_planktonic_scaffold_333344_90
Corallococcus sp. 159B02, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94615..95007
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6E
Pilin {ECO:0000313|EMBL:AFX67140.1}; TaxID=1260177 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus sp. 159B02.;"
pilA; pilin
berkeley_reactor_200306_planktonic_scaffold_333344_91
unknown

Not on your lists

95018..95536
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6D
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_333344_92
R_SM2F11_52_17, SM2F11, Bacteria

Not on your lists

95533..97818
DNA (2286bp) protein (762aa)
general secretory pathway protein E n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6C
general secretion pathway protein E
Tax=RIFCSPHIGHO2_01_SM2F11_52_17_curated
berkeley_reactor_200306_planktonic_scaffold_333344_93
unknown

Not on your lists

97851..98513
DNA (663bp) protein (221aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_94
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(98491..99483)
DNA (993bp) protein (331aa)
glycerate dehydrogenase n=1 Tax=Paenibacillus elgii RepID=UPI000248DA17
Glycerate dehydrogenase {ECO:0000313|EMBL:KEQ25751.1}; TaxID=1501230 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MSt1.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
berkeley_reactor_200306_planktonic_scaffold_333344_95
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

99557..100957
DNA (1401bp) protein (467aa)
FAD linked oxidase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTR6_9BACT
FAD linked oxidase domain protein {ECO:0000313|EMBL:EDY21954.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
FAD linked oxidase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_333344_96
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(100896..101864)
DNA (969bp) protein (323aa)
drug/metabolite exporter n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746344
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT49476.1}; Flags: Precursor;; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
berkeley_reactor_200306_planktonic_scaffold_333344_97
Legionella hackeliae, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102044..102556)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B610F5
conserved membrane protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CEK10406.1}; TaxID=449 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella hackeliae.;"
berkeley_reactor_200306_planktonic_scaffold_333344_98
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102549..103232)
DNA (684bp) protein (228aa)
ThiJ/PfpI domain-containing protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BH26_OLICM
ThiJ/PfpI domain-containing protein
ThiJ/PfpI domain-containing protein {ECO:0000313|EMBL:AEI05981.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
berkeley_reactor_200306_planktonic_scaffold_333344_99
unknown

Not on your lists

comp(103237..103449)
DNA (213bp) protein (71aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_100
unknown

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comp(103446..103748)
DNA (303bp) protein (101aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_101
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

103837..104655
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AE14_NITEC
hypothetical protein
Tax=RBG_16_Anaeromyxobacter_69_14_curated
berkeley_reactor_200306_planktonic_scaffold_333344_102
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(104712..105965)
DNA (1254bp) protein (418aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ05_9BACT
NADP-dependent isocitrate dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_333344_103

Not on your lists

comp(106041..106751)
DNA (711bp) protein (237aa)
conserved putative membrane protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744DBB
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49202.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phosphatidic acid phosphatase
berkeley_reactor_200306_planktonic_scaffold_333344_104
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(106763..107605)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8P9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17271.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_333344_105
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

107691..108458
DNA (768bp) protein (256aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8P8_9BACT
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EDY17270.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
tolQ; biopolymer transport protein
berkeley_reactor_200306_planktonic_scaffold_333344_106
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

108462..108893
DNA (432bp) protein (144aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8P7_9BACT
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EDY17269.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
biopolymer transport protein ExbD/TolR
berkeley_reactor_200306_planktonic_scaffold_333344_107
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

108893..109948
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8P6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17268.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Rhs element Vgr family protein
berkeley_reactor_200306_planktonic_scaffold_333344_108
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

110039..111094
DNA (1056bp) protein (352aa)
Mannitol dehydrogenase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1INZ8_9BACT
alcohol dehydrogenase
Alcohol dehydrogenase {ECO:0000313|EMBL:AHF93645.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_333344_109
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

111091..112092
DNA (1002bp) protein (334aa)
Transcriptional regulator, AraC family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JM22_9BACT
Transcriptional regulator, AraC family protein {ECO:0000313|EMBL:EDY81003.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_333344_110
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

112122..113126
DNA (1005bp) protein (335aa)
General stress protein 69 {ECO:0000313|EMBL:KFB73600.1}; EC=1.1.1.- {ECO:0000313|EMBL:KFB73600.1};; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
aldo/keto reductase (EC:1.1.1.65)
Aldo/keto reductase n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J883_NOSP7
berkeley_reactor_200306_planktonic_scaffold_333344_111
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

113173..113634
DNA (462bp) protein (154aa)
cupin n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745D96
cupin
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ACB76340.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_333344_112
Pseudomonas chloritidismutans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113631..114020)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI000360D084
Membrane protein {ECO:0000313|EMBL:ESQ99353.1}; TaxID=1263865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chloritidismutans AW-1.;"
transporter family protein
berkeley_reactor_200306_planktonic_scaffold_333344_113
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

114141..115583
DNA (1443bp) protein (481aa)
porin n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745AA7
carbohydrate-selective porin OprB
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_114
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(115573..116877)
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RTP1_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EPX95202.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
ophD; Phthalate transporter
berkeley_reactor_200306_planktonic_scaffold_333344_115
unknown

Not on your lists

117583..119055
DNA (1473bp) protein (491aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_116
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

119052..120071
DNA (1020bp) protein (340aa)
Methanol dehydrogenase regulator n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AW87_SYNWW
methanol dehydrogenase regulator
Methanol dehydrogenase regulator {ECO:0000313|EMBL:ABI69017.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
berkeley_reactor_200306_planktonic_scaffold_333344_117
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120038..120976
DNA (939bp) protein (313aa)
von Willebrand factor type A n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LTS0_HALO1
Uncharacterized protein {ECO:0000313|EMBL:AKF06303.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
von Willebrand factor type A
berkeley_reactor_200306_planktonic_scaffold_333344_118
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

120973..122622
DNA (1650bp) protein (550aa)
Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica (strain SH1) RepID=Q7UNM1_RHOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD75397.1}; TaxID=243090 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica (strain SH1).;"
Displaying items 91-120 of 490 in total

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