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berkeley_reactor_200306_planktonic_scaffold_333344_113

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: 114141..115583

Top 3 Functional Annotations

Value Algorithm Source
porin n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745AA7 similarity UNIREF
DB: UNIREF100
  • Identity: 30.0
  • Coverage: 427.0
  • Bit_score: 175
  • Evalue 8.10e-41
carbohydrate-selective porin OprB similarity KEGG
DB: KEGG
  • Identity: 27.3
  • Coverage: 480.0
  • Bit_score: 140
  • Evalue 1.10e-30
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 29.4
  • Coverage: 446.0
  • Bit_score: 181
  • Evalue 1.60e-42

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Taxonomy

RHI_Verrucumicrobia_41_10 → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1443
ATGTGCGCGAGGAGCCTTGGGATCGGCGTCCGGTATATGCTGCGTGAGAGATTTCGCGCGGCTCTCGTTGCGTTAGTCTTGATATTGTCGGACAACGCCGGGGCTCAGATCGCGGCGGATGGCCGCACGGGAAGGGTGGGGCCGTTTCGAGGCGAGCAGACGACCTTCATGTTTCAGTGGAACATGTCGCCGGAGGACTATTTGCAGAAGAACTGGCTCGATCAGCCACAGGCGCTGGGGGCGATTTTCGGCTTTCGTCCTTGGGCGCTGGAGCATGGCGTGACACTGGCGGGCACGTATACAGGATCAGTCATGGGAGGTGTGCTGGGCGGCAAGTCGCAGGGAGCGGCCTACATGGATGTTTTCTTCATGAGTGCCATCCTGGACCTGGGCAAGCTGATCGGCCTGGAGGGGTGGTCGATCTCCATTTCCGCCCGGCAGACCGACGGAAGTTTCATCGCCGATATCGTGGGTTCCACGCCGCTGATGAGTCCTGTCTCCGAAGCCAATCGCAGCTTTCGCCTAGGGCAGCTTAGCTTAAGTTGGGAGGGGTTTGATGATAAGCTCCAGGTTTCGGCGGGACGGTTGGTCTTGAACAACACTTTTGCCCACATCCCGCAGTCGTCACTGTTTATGAATGCTTCGATGAGTGGCTATCCCGGAGCCATTTCCAATGACGTAGCCTTCACCGGTACGAATTCCGCGCGGTGGGGCGCCTTGGTGAATGTGCAGCCGGTCGAGTATGCGTATTTTCTCGCCGGGGTGTTCAGCGCCGATACATCGCTGGAGATCAATAGCGCTCATGGGTGCGATTTCTCCATGCGTCCGCGATCGGGGACGATCGAGATCATGGAGCTTGGCATGTATACGGGCACCTACAATGTGGCATCCGATGGAATGGTATCGCAGCTTTCCTCCACAGGGCCGGAGACGTGGTTCGGCGGAAACCCGGGTGCCTACAAGATCGGAGGCATTATCTCCACCGCGCCATATGATGACTTTCAGTCAGGCGATCAGGTCTGGGGAAACTGGGGGATGTACGCGACTGCGAGCCAGATGGTATACCGGGAGCCCGGCGGCACGGGAGGGCAGGAGGGGCTGACTCTCTTTGGATCAGTGACCTATTTCCCGCCGGATCGCAATTACGTGCCGTGGTTCTTCATGGGTGGAGCGTTCTATCAAGGGCTGGTTCCCGGCCGGGCACGCGATCAATGCGGCGTGGCGTTTTCCTGCGCGTTTTTCAGTGAAGATCTGAAGCGGCTGGAGCAGTCCGTGGGCAATCCCGGTCCCACCAACGAAATGGCACTGGAGTTTGCCTATTCGATCTCGATTACACCTTGGGCTTATGTCACACCGGACGTTCAGGTCCTGGTGAATCCGGGCGCGGCGGGAAACTACCCGACGGCGGTAGTGGTCGGATTTGAGACCGGCATTACGTTCTAG
PROTEIN sequence
Length: 481
MCARSLGIGVRYMLRERFRAALVALVLILSDNAGAQIAADGRTGRVGPFRGEQTTFMFQWNMSPEDYLQKNWLDQPQALGAIFGFRPWALEHGVTLAGTYTGSVMGGVLGGKSQGAAYMDVFFMSAILDLGKLIGLEGWSISISARQTDGSFIADIVGSTPLMSPVSEANRSFRLGQLSLSWEGFDDKLQVSAGRLVLNNTFAHIPQSSLFMNASMSGYPGAISNDVAFTGTNSARWGALVNVQPVEYAYFLAGVFSADTSLEINSAHGCDFSMRPRSGTIEIMELGMYTGTYNVASDGMVSQLSSTGPETWFGGNPGAYKIGGIISTAPYDDFQSGDQVWGNWGMYATASQMVYREPGGTGGQEGLTLFGSVTYFPPDRNYVPWFFMGGAFYQGLVPGRARDQCGVAFSCAFFSEDLKRLEQSVGNPGPTNEMALEFAYSISITPWAYVTPDVQVLVNPGAAGNYPTAVVVGFETGITF*