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berkeley_reactor_200306_planktonic_scaffold_333344

Search features with annotation key words

Displaying items 31-60 of 490 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_333344_30
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

28271..29320
DNA (1050bp) protein (350aa)
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_333344_31
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29394..31526
DNA (2133bp) protein (711aa)
Glycogen debranching enzyme GlgX id=4321893 bin=GWC2_Geobacteraceae_55_20 species=Anabaena cylindrica genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
glycogen debranching protein GlgX
Tax=GWC2_Geobacteraceae_55_20_curated
berkeley_reactor_200306_planktonic_scaffold_333344_32
unknown

Not on your lists

comp(31573..31917)
DNA (345bp) protein (115aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_33
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

32097..32678
DNA (582bp) protein (194aa)
Transcriptional regulator, TraR/DksA family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0A5_9BACT
Transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:EDY20419.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
TraR/DksA family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_333344_34
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


32684..32857
DNA (174bp) protein (58aa)
50S ribosomal protein L33 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0A4_9BACT
rpmG; 50S ribosomal protein L33
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_35
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


32864..33103
DNA (240bp) protein (80aa)
Ribosomal protein S18 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0A3_9BACT
Ribosomal protein S18 {ECO:0000313|EMBL:EDY20417.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
30S ribosomal protein S18
berkeley_reactor_200306_planktonic_scaffold_333344_36
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(33105..35552)
DNA (2448bp) protein (816aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D235_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19275.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_333344_37
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(35576..36196)
DNA (621bp) protein (207aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ABC transporter-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3F5_9BACT
ABC transporter
berkeley_reactor_200306_planktonic_scaffold_333344_38

Not on your lists

36347..37255
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4J339_9GAMM
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48360.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_333344_39
unknown

Not on your lists

37346..38725
DNA (1380bp) protein (460aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_40
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

38763..39188
DNA (426bp) protein (142aa)
thioesterase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745ED6
thioesterase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_41
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

39185..40861
DNA (1677bp) protein (559aa)
4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family id=4527525 bin=GWC2_Methylomirabilis_70_16 species=Methylacidiphilum infernorum genus=Methylacidiphilum taxon_order=Methylacidiphilales taxon_class=unknown phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
arnT; 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family
Tax=GWC2_Rokubacteria_70_16_curated
berkeley_reactor_200306_planktonic_scaffold_333344_42
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

40907..41827
DNA (921bp) protein (307aa)
Thioredoxin reductase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8X6_9BACT
thioredoxin reductase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_43
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

41858..43030
DNA (1173bp) protein (391aa)
Glycosyl transferase group 1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D879_9BACT
Glycosyl transferase group 1 {ECO:0000313|EMBL:EDY17272.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rfaG; glycosyltransferase
berkeley_reactor_200306_planktonic_scaffold_333344_44
unknown

Not on your lists

comp(43032..43439)
DNA (408bp) protein (136aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_45
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

43475..44137
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D881_9BACT
wecD; Acetyltransferase, GNAT family
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_46
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

44195..45577
DNA (1383bp) protein (461aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI000368A063
DNA polymerase V {ECO:0000313|EMBL:KIX22185.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_333344_47
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(46020..46790)
DNA (771bp) protein (257aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=521098 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC; 27009 / DSM 446 / JCM 5260 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 /; 104-1A) (Bacillus acidocaldarius).;"
Superoxide dismutase n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WV28_ALIAD
sodA; Superoxide dismutase
berkeley_reactor_200306_planktonic_scaffold_333344_48
Cyanobacterium aponinum, Cyanobacterium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

47018..48025
DNA (1008bp) protein (336aa)
Phosphate-binding protein n=1 Tax=Cyanobacterium aponinum (strain PCC 10605) RepID=K9Z5P6_CYAAP
phosphate ABC transporter substrate-binding protein
Phosphate-binding protein {ECO:0000256|PIRNR:PIRNR002756}; Flags: Precursor;; TaxID=755178 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobacterium.;" source="Cyanobacterium aponinum (strain PCC 10605).;"
berkeley_reactor_200306_planktonic_scaffold_333344_49
Nostoc sp. PCC 7107, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

48055..49023
DNA (969bp) protein (323aa)
Phosphate ABC transporter membrane protein 1, PhoT family n=1 Tax=Nostoc sp. PCC 7107 RepID=K9QBG6_9NOSO
phosphate ABC transporter membrane protein
Phosphate ABC transporter membrane protein 1, PhoT family {ECO:0000313|EMBL:AFY43000.1}; Flags: Precursor;; TaxID=317936 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. PCC 7107.;"
berkeley_reactor_200306_planktonic_scaffold_333344_50
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49026..49922
DNA (897bp) protein (299aa)
Phosphate ABC transporter, inner membrane subunit PstA n=1 Tax=Pseudomonas fulva (strain 12-X) RepID=F6AJJ0_PSEF1
phosphate ABC transporter permease
Phosphate ABC transporter, inner membrane subunit PstA {ECO:0000313|EMBL:AEF21771.1}; TaxID=743720 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva (strain 12-X).;"
berkeley_reactor_200306_planktonic_scaffold_333344_51
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

Not on your lists

49941..50768
DNA (828bp) protein (276aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=313628 species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
ATP-binding component of ABC phosphate transporter n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFF7_9BACT
phosphate ABC transporter ATPase
berkeley_reactor_200306_planktonic_scaffold_333344_52
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

50822..51502
DNA (681bp) protein (227aa)
phosphate uptake regulator, PhoU n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745E5D
PhoU family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_trna_2
unknown

Not on your lists

51611..51682
DNA (72bp)
transferRNA Met
berkeley_reactor_200306_planktonic_scaffold_333344_53
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


51701..51967
DNA (267bp) protein (89aa)
30S ribosomal protein S20 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBH8_9BACT
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
s20: ribosomal protein S20
berkeley_reactor_200306_planktonic_scaffold_333344_54
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

51994..53229
DNA (1236bp) protein (412aa)
carboxypeptidase G2 id=4207888 bin=GWF2_Lentisphaerae_52_8 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
peptidase dimerisation domain-containing protein
Tax=RBG_16_Chloroflexi_57_11_curated
berkeley_reactor_200306_planktonic_scaffold_333344_55
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

53226..54254
DNA (1029bp) protein (343aa)
chloromuconate cycloisomerase YkfB1 n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746AFF
mandelate racemase
Tax=GWB2_Chloroflexi_54_36_curated
berkeley_reactor_200306_planktonic_scaffold_333344_56
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(54229..55308)
DNA (1080bp) protein (360aa)
Cell wall hydrolase/autolysin n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXU6_9BACT
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:EDY21094.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
amiC; N-acetylmuramoyl-L-alanine amidase
berkeley_reactor_200306_planktonic_scaffold_333344_57
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(55394..56812)
DNA (1419bp) protein (473aa)
Carbohydrate-selective porin OprB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0G0_9BACT
carbohydrate-selective porin, OprB family
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_58
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(56882..58006)
DNA (1125bp) protein (375aa)
glucose sorbosone dehydrogenase n=1 Tax=Anaerophaga thermohalophila RepID=UPI0002EA63BD
glucose sorbosone dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
Displaying items 31-60 of 490 in total

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