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berkeley_reactor_200306_planktonic_scaffold_333344_57

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: comp(55394..56812)

Top 3 Functional Annotations

Value Algorithm Source
Carbohydrate-selective porin OprB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0G0_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 44.3
  • Coverage: 287.0
  • Bit_score: 249
  • Evalue 4.30e-63
carbohydrate-selective porin, OprB family similarity KEGG
DB: KEGG
  • Identity: 32.9
  • Coverage: 480.0
  • Bit_score: 226
  • Evalue 8.50e-57
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 50.4
  • Coverage: 425.0
  • Bit_score: 421
  • Evalue 1.50e-114

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Taxonomy

RHI_Verrucumicrobia_41_10 → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1419
ATGAGAACTCTCTCACTCGCTGGCATCGGTGCTGCCGCCCTCGCCCTGACCACCACCTTCTCCTTCGCGGGAGAATCCGGAAGCCGCTCGCGGTTTTGGGACTACTACAATCCCTATCCCTCCAACTATATCGGCTCCCCGGAGTGGTGGAATGGCCCCACGCTGCTCGGCGACTGGTGGGGTGTCCGAAACTGGCTCGATGACAACGGCATCGAGTTCTCCGGTTCCTATACGAACAACATCGCTGGCAACGTAACCGGAGGTAAGGATCAGGGATTCACTTACTGCGACAACATCCTCGTGGGCGTCGCCCTCGATCTGGAGAAAATCGCCGGTTGGAAGGGTGCTTCGATCACCGTGAGCGGGCTGAACCGCGATGGTACGAACCTCTCGCAGGACTACATCGGCAACCAGTTCACCGTCCAGCAGGTCTACGGTGGCTCCGCCGTCATGCTCTACGAGCTTGCCCTCGAGCAAAAGCTCCTGGAGGACAAGGTCTCGATCAAGGTCGGTCGCTTCGCCACCGGGGATGACTTTGCCTCCTCCCCGCTCTACTGGCTCTACATGAACAATGGCATCGACGGCAACCCGCAGGCGCTGCCGGTCAACAGCCAGTTCTCCGCCTATCCCTGGGCGGTGTGGGCCGCTCGCCTGAAGGTGCAGCCGACTAAGGAATGGACGGGCCAGCTCGGCATCTATCAGGTGTCCAGTCGCGTCTTCAACCGGAACTACCACGGCGTGGACTTCAGCATTCGTCCCGACGACGGGTTCCTGCTCATCAGCCAGTTCGGCTGGTCGCCGGAGTTCTTCAAGCGTGAGGTGCCCACCAATACCACGCGCGACGGCAAGCAGGTCGTGGACAGCAAGTCGGTCGTCGACGGCAAATCGTCCAAATCCTTCAAGGAACCCGTCGAAATGAAGGGCCTGAAGGGCCATTACTGGTTTGGCGTCTACTGGTCGCCATGGTCCTACCCCGTCATCGGCGGCACGCCCGATCAGAAGGCGCAAAACGCCTACGGCTTCTACTGGCATGCAGACCAGATGGTCTTCCAGGAGGCCCCCGGCAGCGACCAGGGTCTTTACCTCTGGAGCGCCTTTGTCCTCTCCCCGCAGCAAAACATCGCCAAGCTGCCCTTTGAGGCGAACTTCGGTCTGGCCTACCAGGGTCTCATTCCCACCCGCGACACCGACTGGACGACCTTCGGCTTTGTCTACGGCAGCTTCAGCGACCAGCAGCCCGGCGCCACCCCGGATGATCCGAAGCCGAACTACGAACTCGTCCTGGAAGGCGGCTACAAGATCCAGCTGACGAAATTTGCCTTCATCCAGCCGGACATCCAGTACGTGATCAACCCGGGTGGAAATCCGAATATCGGCAACGCCCTCGTCCTCGGCGCCCAGATGGGTGTCACGTTCTAA
PROTEIN sequence
Length: 473
MRTLSLAGIGAAALALTTTFSFAGESGSRSRFWDYYNPYPSNYIGSPEWWNGPTLLGDWWGVRNWLDDNGIEFSGSYTNNIAGNVTGGKDQGFTYCDNILVGVALDLEKIAGWKGASITVSGLNRDGTNLSQDYIGNQFTVQQVYGGSAVMLYELALEQKLLEDKVSIKVGRFATGDDFASSPLYWLYMNNGIDGNPQALPVNSQFSAYPWAVWAARLKVQPTKEWTGQLGIYQVSSRVFNRNYHGVDFSIRPDDGFLLISQFGWSPEFFKREVPTNTTRDGKQVVDSKSVVDGKSSKSFKEPVEMKGLKGHYWFGVYWSPWSYPVIGGTPDQKAQNAYGFYWHADQMVFQEAPGSDQGLYLWSAFVLSPQQNIAKLPFEANFGLAYQGLIPTRDTDWTTFGFVYGSFSDQQPGATPDDPKPNYELVLEGGYKIQLTKFAFIQPDIQYVINPGGNPNIGNALVLGAQMGVTF*