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berkeley_reactor_200306_planktonic_scaffold_333344_75

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: comp(78018..79994)

Top 3 Functional Annotations

Value Algorithm Source
Type II secretory pathway component, protein D n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A7B similarity UNIREF
DB: UNIREF100
  • Identity: 40.9
  • Coverage: 667.0
  • Bit_score: 478
  • Evalue 6.10e-132
gspD; type II secretion system protein D similarity KEGG
DB: KEGG
  • Identity: 22.7
  • Coverage: 494.0
  • Bit_score: 123
  • Evalue 1.40e-25
Tax=BJP_08E140C01_10KDA_Methylophilales_47_88 similarity UNIPROT
DB: UniProtKB
  • Identity: 26.0
  • Coverage: 538.0
  • Bit_score: 141
  • Evalue 4.30e-30

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Taxonomy

BJP_08E140C01_10KDA_Methylophilales_47_88 → Methylophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1977
ATGACCGTCCCGCTGGCGCCCCAGACGATTCCAGCTCCGGCTTTCGAGGTTTACCCGGACTACAACTGGGGCAACGCCATGGCGGCAAAGCTCCGCAACGCGCCAGCCAAGCTCTATGAGTTTGATCGTGCCTCTCTTCGCGACGTCCTCCGCTTCCTCGCAGATGATGCCGGTATCCCCTTCGTTGCCCTGCAGGAGTCCTCGGCTGCCGAAAATACGCTCGTCACTTTCACCCTGAAGGCCAGCCCGTTCCGGACCCTTGAGACCGTCGCGAAGGCCAATGGCGTCACGATCTTCTACGAAAACGGTGTGTGGTTCATGCGCCCCACCAACGAAAAGGAACTCGTCGGGCGCATCTACAAGATCAAGTTCAACCCTCAGGACAACGTCAAGTACGAGGGCGGCAATGGCACCACGGGTGGCAGCGCCAACTCAAGCTCCAGCTCATCCAGCGGCACGGGCATCGGAGACATCAACATGCAGGGTGCCACCACGGTCTTCAAGGTGGAGACGCCAAAGATCATTGAGCAGATCAAGTCCCTGCTCGGCATTCCGACCAGTTCGGTTTCGGCAGCGCACGCCGACGAGGCCAGCGTCGAAAATTTCGGCTCCCTTCAAACGACTCCCACCGCCGTGGCCCCCGGCAGCCAGTTGGCCGCCAACAGCTCTGGCGATGGAGGCCCACAGGTCATTTACAATGCGGATTCCGGCACGGTGTATGTCATCGCCACCCGCCAGCAGCACCAATGGGTTGAAGGTTACCTCAGCGCAGTGGATCGTCCCCAGGCTCTCATCGGTATCGAGGTAAAGTTCTTCGAGACGACCAAGGACCCGTCGAAAGAACTCGGCATCAACTGGGCAGGCACGCTCAAGGGCGGCTTCGACGTCTCGCTGACCAATATCCAGGCGTCTCCCTCTGGATCGATCAACATTGATACCAACAACCAGAACCAGCGCCAATCTGGACAGCTTCCCCCTGGCTCCTCTCCCTACGACTACTCGACATACAACAAGGACTACACCGTCTCGGCGGCAATGCCCTACTCGGCAGTCCTTTCGGTGCACGATGTCTCCGCCGCGCTTCAGGCCTTTCTTACCGATAACGAGACAACGACGGTGCAGTACCCCCGCGTGCTCACCATCAACAACCGCGAGGTGGTCATCCGCAGCGTCGTCAATCAGCCCGTTCTCGCCTCATCGTCTTCTGTGACACCTGGCGTCGGCGGCACCACCACTGCCGAGGTCGAGTATCTTCCCATCGGTACGATCATCAACATCCTGCCCAAGACCATGCCCGACAATTCGGTCGTCCTGAATGTTGCGATCACCATTTCCTCGATCGTGGGCACCACCACCATCCAGGGCAACGACTACCCCATCGCCTCATCGCGCATCTACAATGCCGCGTTGCAGGTGGACTCGGGTTACACCCTGGCCGTCGGCGGCCTTGAGCAGGCCTTCGACGAATATGCCCGCAATGGCGTCCCGTTCCTGAGAGACATTCCCGGCATCGGCGAGCTCTTCAAAGCCAAGGGTCGTGCCCGCAGCAAGAAGAACCTCATCATTTTCATCACGCCGACGATCATCACCAATCGCTCGACCACTCCCGGCATCGCCGAAGTGCCGCAGAGTGTAATCCCGGTACGTCCCAATGAGCCCACCCCGCCCGCCTTTACGCCTCAGGGTCGACTCGTGGGAGGAGAAGCCGCCATCGACGAAGCCGCTCGCTGGCTTGAGCGCCAGATCGAATATTACCGTCAGGTGACCAAGGAAAACCGTACGGACAAGGAGTCGATGCGCCAACTCGCCTCGGTCATCAACTCCGCCCAGATGCTTCTCACAGAGATCCAACTGCTCGAGGACCAAAATCCCGCGGCCATCAGTCAACTCGTGAAGAAGGAAGAGCGCACCCTGAGCATCATTCAGGAGCTCAACAAAGTCCAAAGCGCCGCCCGCAAGGACCTGATGTCCTTCTAG
PROTEIN sequence
Length: 659
MTVPLAPQTIPAPAFEVYPDYNWGNAMAAKLRNAPAKLYEFDRASLRDVLRFLADDAGIPFVALQESSAAENTLVTFTLKASPFRTLETVAKANGVTIFYENGVWFMRPTNEKELVGRIYKIKFNPQDNVKYEGGNGTTGGSANSSSSSSSGTGIGDINMQGATTVFKVETPKIIEQIKSLLGIPTSSVSAAHADEASVENFGSLQTTPTAVAPGSQLAANSSGDGGPQVIYNADSGTVYVIATRQQHQWVEGYLSAVDRPQALIGIEVKFFETTKDPSKELGINWAGTLKGGFDVSLTNIQASPSGSINIDTNNQNQRQSGQLPPGSSPYDYSTYNKDYTVSAAMPYSAVLSVHDVSAALQAFLTDNETTTVQYPRVLTINNREVVIRSVVNQPVLASSSSVTPGVGGTTTAEVEYLPIGTIINILPKTMPDNSVVLNVAITISSIVGTTTIQGNDYPIASSRIYNAALQVDSGYTLAVGGLEQAFDEYARNGVPFLRDIPGIGELFKAKGRARSKKNLIIFITPTIITNRSTTPGIAEVPQSVIPVRPNEPTPPAFTPQGRLVGGEAAIDEAARWLERQIEYYRQVTKENRTDKESMRQLASVINSAQMLLTEIQLLEDQNPAAISQLVKKEERTLSIIQELNKVQSAARKDLMSF*