ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_333344_329

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: comp(366551..367360)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, AraC family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNM6_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 29.9
  • Coverage: 251.0
  • Bit_score: 117
  • Evalue 1.50e-23
Transcriptional regulator, AraC family protein {ECO:0000313|EMBL:EDY83289.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 29.9
  • Coverage: 251.0
  • Bit_score: 117
  • Evalue 2.10e-23
helix-turn-helix domain protein similarity KEGG
DB: KEGG
  • Identity: 28.3
  • Coverage: 240.0
  • Bit_score: 105
  • Evalue 1.20e-20

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Verrucomicrobiae bacterium DG1235 → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 810
ATGGCTTTGCCGAAAAACCCGCTGGATATTTCCGTCCCTTTCGGTGCGTCGCGTCAGGTGGTTCACAGCCGGTATCACTGGAACAATGACAATCGGAGCGATGAAGTCTTCGTCATCATTCAACGCACCCAGCATGGACTTGGGCGCGTGATTTATCAGGGTCGCGAGCACGAGGTGCCGGAAGGACATGCCTTCATCGTGCTGGTTCCGGAGAAGAGCGAATATGGGTTGCCAGAGAATCCCAAGGGGCCATGGGAGCTGGCGTGGCTCAACCTGTACGGCGAACTCGGCATCCGGCTTTGCCGGGAGCTTCGTGAGGCTTTCGGGCCGGTGATTCCCATGACTCGGACAGGCGAAGCGGCGACGCTCTTCTTTTCGCTGATCCGGCAGGCTGAACGACGGGTTTCGGTCGATCCGTTCACGGCCAGCACGCAATGTTTTGCGTTTCTCGCCGCATGGACCCGCGAAGCGAGCACCCCAGCCGCCCGCACCCTTGACCCCGTACAAGCGGCGAAGCTGATCTGCGAGCGGCGATTCCGCGAGCCCATCGGTATCAAGGAACTCGCGGCGGAAACCGGACTCTCGCGGGAACATTTCACCCGGCTGTTTTCCAATCGCATGAAAACTGCCCCGGCGGCATATCTCCGGAGGCTGCGCGCAAAGGAGGCGCAGCAGCTCCTCGACCGGCCGGGCATGACGCTGACAGAGGCAGCGCTACGCAGCGGGTTTGCCTCGGTAAAGGCGATGAACCGGGCGCTTCAGGCGCTGGCGAAGTCCTCACGCACGCGCCGGGTGTCCCGGCCCAAGTAG
PROTEIN sequence
Length: 270
MALPKNPLDISVPFGASRQVVHSRYHWNNDNRSDEVFVIIQRTQHGLGRVIYQGREHEVPEGHAFIVLVPEKSEYGLPENPKGPWELAWLNLYGELGIRLCRELREAFGPVIPMTRTGEAATLFFSLIRQAERRVSVDPFTASTQCFAFLAAWTREASTPAARTLDPVQAAKLICERRFREPIGIKELAAETGLSREHFTRLFSNRMKTAPAAYLRRLRAKEAQQLLDRPGMTLTEAALRSGFASVKAMNRALQALAKSSRTRRVSRPK*