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berkeley_reactor_200306_planktonic_scaffold_333344

Search features with annotation key words

Displaying items 331-360 of 490 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_333344_328
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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365313..366602
DNA (1290bp) protein (430aa)
Major facilitator superfamily MFS_1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9R9_9BACT
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EDY16850.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
MFS transporter
berkeley_reactor_200306_planktonic_scaffold_333344_329
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(366551..367360)
DNA (810bp) protein (270aa)
Transcriptional regulator, AraC family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNM6_9BACT
Transcriptional regulator, AraC family protein {ECO:0000313|EMBL:EDY83289.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
helix-turn-helix domain protein
berkeley_reactor_200306_planktonic_scaffold_333344_330
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

367441..368871
DNA (1431bp) protein (477aa)
Alpha-galactosidase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IY34_9BACT
glycoside hydrolase
Glycoside hydrolase {ECO:0000313|EMBL:AHF93899.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_333344_331
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

368948..370285
DNA (1338bp) protein (446aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Trigger factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1C3_9BACT
trigger factor
berkeley_reactor_200306_planktonic_scaffold_333344_332
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

370291..370920
DNA (630bp) protein (210aa)
endopeptidase Clp (EC:3.4.21.92)
Clp protease proteolytic subunit ClpP n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745C29
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_333

Not on your lists

370932..372206
DNA (1275bp) protein (425aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1C5_9BACT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
clpX; ATP-dependent Clp protease ATP-binding subunit clpX
berkeley_reactor_200306_planktonic_scaffold_333344_334
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

372225..373466
DNA (1242bp) protein (414aa)
Glycosyl transferase group 1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6F7_9BACT
Glycosyl transferase group 1 {ECO:0000313|EMBL:EDY18066.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
group 1 glycosyl transferase
berkeley_reactor_200306_planktonic_scaffold_333344_335
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

373463..374023
DNA (561bp) protein (187aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU06_9BACT
tRNA (guanine-N(7)-)-methyltransferase
berkeley_reactor_200306_planktonic_scaffold_333344_336
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(374020..375186)
DNA (1167bp) protein (389aa)
Glycosyl transferase group 1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6F8_9BACT
Glycosyl transferase group 1 {ECO:0000313|EMBL:EDY18067.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
group 1 glycosyl transferase
berkeley_reactor_200306_planktonic_scaffold_333344_337
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

375298..375897
DNA (600bp) protein (200aa)
RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWR9_9BACT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ECF subfamily RNA polymerase sigma-24 subunit
berkeley_reactor_200306_planktonic_scaffold_333344_338
Arthrobacter sp. PAMC25486, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(375898..377187)
DNA (1290bp) protein (430aa)
Choline-sulfatase n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K792_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY03189.1}; TaxID=1494608 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. PAMC25486.;"
berkeley_reactor_200306_planktonic_scaffold_333344_339
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(377188..378114)
DNA (927bp) protein (309aa)
Adenylate/guanylate cyclase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5D5_9BACT
Adenylate/guanylate cyclase {ECO:0000313|EMBL:EDY18340.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
guanylate cyclase
berkeley_reactor_200306_planktonic_scaffold_333344_340
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(378146..378820)
DNA (675bp) protein (225aa)
Riboflavin synthase, alpha subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAG3_9BACT
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:EDY16624.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ribE; riboflavin synthase subunit alpha
berkeley_reactor_200306_planktonic_scaffold_333344_341
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

378843..379523
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D547_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_342
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

379565..380188
DNA (624bp) protein (208aa)
Lipolytic protein G-D-S-L family n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IYB3_9BACT
GDSL family lipase
GDSL family lipase {ECO:0000313|EMBL:AHF89081.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_333344_343
unknown

Not on your lists

comp(380189..380731)
DNA (543bp) protein (181aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_344
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(380738..382660)
DNA (1923bp) protein (641aa)
type II secretory protein GspE n=2 Tax=unclassified candidate division EM 19 RepID=UPI0003B7AF79
type II secretion system protein E
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
berkeley_reactor_200306_planktonic_scaffold_333344_345
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(382860..385952)
DNA (3093bp) protein (1031aa)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ACT93743.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ACT93743.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00036955D1
PAS/PAC sensor hybrid histidine kinase
berkeley_reactor_200306_planktonic_scaffold_333344_346
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

386039..387103
DNA (1065bp) protein (355aa)
ABC transporter-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9W9_9BACT
ABC transporter-related protein {ECO:0000313|EMBL:EDY16783.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
spermidine/putrescine ABC transporter ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_333344_347
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

387100..388671
DNA (1572bp) protein (524aa)
ABC-type Fe3+ transport system periplasmic component-like protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9W8_9BACT
ABC-type Fe3+ transport system periplasmic component-like protein {ECO:0000313|EMBL:EDY16782.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
iron ABC transporter substrate-binding protein
berkeley_reactor_200306_planktonic_scaffold_333344_348
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

388668..390362
DNA (1695bp) protein (565aa)
ABC-type Fe3+ transport system, permease component n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AZN5_9BACT
ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_333344_349
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

390444..391547
DNA (1104bp) protein (368aa)
2-alkenal reductase {ECO:0000313|EMBL:EDY19358.1}; EC=1.3.1.74 {ECO:0000313|EMBL:EDY19358.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
degQ; protease DegQ (EC:3.4.21.-)
2-alkenal reductase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2B8_9BACT
berkeley_reactor_200306_planktonic_scaffold_333344_350
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

391741..392652
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTR3_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_351
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

392649..395138
DNA (2490bp) protein (830aa)
Serine/threonine protein kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTR2_9BACT
Serine/threonine protein kinase {ECO:0000313|EMBL:EDY21950.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
serine/threonine protein kinase
berkeley_reactor_200306_planktonic_scaffold_333344_352
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

395135..396061
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTR1_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_353
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

396126..398780
DNA (2655bp) protein (885aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI0003648053
Glycoside hydrolase, family 63 {ECO:0000313|EMBL:AHG93207.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Glycoside hydrolase, family 63
berkeley_reactor_200306_planktonic_scaffold_333344_354
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(398784..399893)
DNA (1110bp) protein (370aa)
DNA polymerase III, delta subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1F9_9BACT
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EDY19571.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
DNA polymerase III subunit delta
berkeley_reactor_200306_planktonic_scaffold_333344_355
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(399894..402074)
DNA (2181bp) protein (727aa)
UvrABC system protein B n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1F3_9BACT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
excinuclease ABC subunit B
berkeley_reactor_200306_planktonic_scaffold_333344_356
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


402180..402440
DNA (261bp) protein (87aa)
30S ribosomal protein S15 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3S0_9BACT
ribosomal protein S15
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_357
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

402547..404673
DNA (2127bp) protein (709aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3R8_9BACT
Displaying items 331-360 of 490 in total

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