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berkeley_reactor_200306_planktonic_scaffold_333344_337

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: 375298..375897

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWR9_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 55.4
  • Coverage: 202.0
  • Bit_score: 221
  • Evalue 4.10e-55
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.4
  • Coverage: 202.0
  • Bit_score: 221
  • Evalue 5.70e-55
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 56.2
  • Coverage: 185.0
  • Bit_score: 193
  • Evalue 3.40e-47

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Taxonomy

Chthoniobacter flavus → Chthoniobacter → Spartobacteria → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 600
ATGAATTTGGATGCTTCCCCCAACGATGATTCGTCGGCGGCGGAGGATGTTCATCTCATGCTCCGTGTGCGGGACGGCGATATCGACGCCTTCGAAAGTCTGGTTGTCAAACACCAGCATAGCGTCATTGGTACGGTAGCGCGCATGATGGGAAATCCGTCGGACTCCGAGGATATCGCTCAGCAGGTCTTCATCAGAGTCTGGAAGTCGGCCGTACGCTACGAGCCGAGCGCGAAGTTCACCACATGGCTCATGACCATCACCCGCAACCTCGTCTTCAACGAATCCCGCCGCCGGAGCCGGGCCAGGGTCGTACCTTTGCATGACGATGCCGACGACGGGCCGACGGTGCAGTATGCCGACCCCGAGGCCGGCTCTCCCGCCGACGATCTGTTGGATGCAGAACTGCGTGACGCAGTCGACACCGCCATCGCGGAACTCCCCGAAAAGCACCGCCTCGCCATTATCCTGCGGCGGTATGAAAACATGGCCTACGAGGAAATCGCCAAGGTTCTCAAGACCAGCGTCCCTGCCGTGAAAAGCATCCTGTTTCGCGCCCGGGCCGACCTGAAGGCGAAACTCCAGCGCTATCTGGAGTGA
PROTEIN sequence
Length: 200
MNLDASPNDDSSAAEDVHLMLRVRDGDIDAFESLVVKHQHSVIGTVARMMGNPSDSEDIAQQVFIRVWKSAVRYEPSAKFTTWLMTITRNLVFNESRRRSRARVVPLHDDADDGPTVQYADPEAGSPADDLLDAELRDAVDTAIAELPEKHRLAIILRRYENMAYEEIAKVLKTSVPAVKSILFRARADLKAKLQRYLE*