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berkeley_reactor_200306_planktonic_scaffold_333344

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Displaying items 361-390 of 490 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_333344_358
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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404829..406280
DNA (1452bp) protein (484aa)
porin n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745AA7 id=11897 bin=ACD17 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=ACD17 organism_group=Chlamydiae organism_desc=CvE6
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_359
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(406633..408405)
DNA (1773bp) protein (591aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCX4_9BACT
berkeley_reactor_200306_planktonic_scaffold_333344_360
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(408730..409038)
DNA (309bp) protein (103aa)
Phosphotransferase system, phosphocarrier protein HPr n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5T5_9BACT
Phosphotransferase system, phosphocarrier protein HPr {ECO:0000313|EMBL:EDY18138.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
fruB; phosphotransferase system HPr-related protein
berkeley_reactor_200306_planktonic_scaffold_333344_361
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(409038..410015)
DNA (978bp) protein (326aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
HPr kinase/phosphorylase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5T4_9BACT
hprK; Serine kinase of the HPr protein, regulates carbohydrate metabolism
berkeley_reactor_200306_planktonic_scaffold_333344_362
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(410021..410800)
DNA (780bp) protein (260aa)
ABC transporter-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5R6_9BACT
ABC transporter-related protein {ECO:0000313|EMBL:EDY18119.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
yhbG; ABC transporter ATPase
berkeley_reactor_200306_planktonic_scaffold_333344_363
unknown

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comp(410800..411390)
DNA (591bp) protein (197aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_364
unknown

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comp(411394..411915)
DNA (522bp) protein (174aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_365
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(411899..412720)
DNA (822bp) protein (274aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|SAAS:SAAS00078538};; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5S1_9BACT
2-dehydro-3-deoxyphosphooctonate aldolase
berkeley_reactor_200306_planktonic_scaffold_333344_366
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(412761..414587)
DNA (1827bp) protein (609aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AZ05_9BACT
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EIQ00247.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
ATP-dependent DNA helicase RecQ
berkeley_reactor_200306_planktonic_scaffold_333344_367
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(414741..415076)
DNA (336bp) protein (112aa)
Glutaredoxin n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D391_9BACT
Glutaredoxin {ECO:0000313|EMBL:EDY19202.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
glutaredoxin
berkeley_reactor_200306_planktonic_scaffold_333344_368
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(415113..416801)
DNA (1689bp) protein (563aa)
30S ribosomal protein S1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D371_9BACT
Ribosomal protein S1 {ECO:0000313|EMBL:EDY19182.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
30S ribosomal protein S1
berkeley_reactor_200306_planktonic_scaffold_333344_369
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(416939..418486)
DNA (1548bp) protein (516aa)
Probable malate:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00212}; EC=1.1.5.4 {ECO:0000256|HAMAP-Rule:MF_00212};; MQO {ECO:0000256|HAMAP-Rule:MF_00212}; Malate dehydrogenase [quinone] {ECO:0000256|HAMAP-Rule:MF_00212}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Probable malate:quinone oxidoreductase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PGD7_CHIPD
malate:quinone oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_333344_370
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(418565..421789)
DNA (3225bp) protein (1075aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI0003793CC7
carbamoyl-phosphate synthase large subunit
berkeley_reactor_200306_planktonic_scaffold_333344_371
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

421887..422159
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTT6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21974.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_333344_372
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

422192..422986
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTT7_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_373
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

422986..423774
DNA (789bp) protein (263aa)
ABC transporter-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTT8_9BACT
ABC transporter-like protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_374
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

423794..424660
DNA (867bp) protein (289aa)
Mammalian cell entry related domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTT9_9BACT
Mammalian cell entry related domain protein {ECO:0000313|EMBL:EDY21977.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ttg2C; organic solvent ABC transporter periplasmic protein
berkeley_reactor_200306_planktonic_scaffold_333344_375
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

424668..425351
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2ZCP6_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:GAD58822.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_333344_376
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(425365..426678)
DNA (1314bp) protein (438aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Glutamate--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ9_9BACT
glutamyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_333344_377
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

426817..427269
DNA (453bp) protein (151aa)
GatB/YqeY domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D702_9BACT
GatB/YqeY domain protein {ECO:0000313|EMBL:EDY17653.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
GatB/YqeY domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_333344_378
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

427266..427955
DNA (690bp) protein (230aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D703_9BACT
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
berkeley_reactor_200306_planktonic_scaffold_333344_379
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

427952..429217
DNA (1266bp) protein (422aa)
Peptidase M16 domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D704_9BACT
Peptidase M16 domain protein {ECO:0000313|EMBL:EDY17655.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PqqL; Zn-dependent peptidase
berkeley_reactor_200306_planktonic_scaffold_333344_380
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

429214..429873
DNA (660bp) protein (220aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP8_9BACT
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:EDY21490.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
phosphatase/phosphohexomutase HAD superfamily
berkeley_reactor_200306_planktonic_scaffold_333344_381
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

429922..430329
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AVS5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EIP99116.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_333344_382
unknown

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comp(430357..430728)
DNA (372bp) protein (124aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_383
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(430728..432308)
DNA (1581bp) protein (527aa)
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
Glucose-6-phosphate isomerase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IUV7_9BACT
berkeley_reactor_200306_planktonic_scaffold_333344_384
Megasphaera sp. BV3C16-1, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

432338..432790
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745115
tRNA threonylcarbamoyl adenosine modification protein YjeE {ECO:0000313|EMBL:ERT60090.1}; TaxID=1111454 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. BV3C16-1.;"
conserved hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_333344_385
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

432787..433374
DNA (588bp) protein (196aa)
Peptidase M22 glycoprotease n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D451_9BACT
putative glycoprotease M22
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_trna_3
unknown

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433421..433503
DNA (83bp)
transferRNA Leu
berkeley_reactor_200306_planktonic_scaffold_333344_386
unknown

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comp(433707..434984)
DNA (1278bp) protein (426aa)

This feature has no annotations

Displaying items 361-390 of 490 in total

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