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berkeley_reactor_200306_planktonic_scaffold_333344_358

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: 404829..406280

Top 3 Functional Annotations

Value Algorithm Source
porin n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745AA7 id=11897 bin=ACD17 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=ACD17 organism_group=Chlamydiae organism_desc=CvE6 similarity UNIREF
DB: UNIREF100
  • Identity: 26.2
  • Coverage: 359.0
  • Bit_score: 112
  • Evalue 8.50e-22
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 28.6
  • Coverage: 465.0
  • Bit_score: 150
  • Evalue 3.90e-33

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Taxonomy

RHI_Verrucumicrobia_41_10 → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1452
ATGAAATTACCGACAAGCCTGCCGTGGCGCTCGTTTTTTAGTGCCGCAGTCTGTTCAACCCTTATCGCAACATCCGTTCACGCTGGAACGGCTACGACGACCGTCGTTGAGGAGTCTTCCTCCTCCGACTCGTGGCTGAAGACCTGGTGGGAAGGCAAGTACATGACCGGCAACTGGTTCGGTCTGCGCGACACCCTTGAGGAAAACGGCCTCACCCTCGGTGGCAAATATGAAGGCGCCTACTTTGGCGTCGTCGATAGCGCCGGAGGCTCCCGCGGGTTCTACGACCAGCAGTTGACCTTCACGGGCGACCTGAATTTCGGCAAGCTCCTCAAGACGGAAGCTCTTGAAGGTGTCAAAGCCTTCGGTGTGGTACGCTGGCGTGATCCCCGTCAGGCCTCGAATCCGAATCAGTTTGTCGATGCGTCCAGCATGTTTAACCCGTCGAACTGGCAGTCGGGCACCCAGTGGCGCATGATGTCCTTTGGCATGGAAATCGGTACGGCCAACCTCCTGCCGGTCAAGGATATGATCGTCCTGCGTGGCGGCTGGCTCCAGCCGAACCGTGAGTTCATCGATCAGCCGCTTTCCAAGCTCTTTTCGAACAACGCGATCAACAGTGCCAAGGGCGTGGGTGGCAATATCCCGTTCTCGTCCAGCTTCTCAACCTGGGGCGGCACCCTGAAGGTCAAGCCGGTCGAGTGGTACTATGCCAAGGCTGGTCTCTTCATGTCCTACCCGCAGGCTACAGCCACAGGTAACCACGGTCTTGCTTACCAGGGTTATGCTCAGGATCAGAGCCAGAATGGCCTCTTCTTCATGGGTGAGACTGGATTCACGCCGAAAATTGGCTCGTCCAAGCTCCCGGGCAAATATGCCTTTGGAGGCTACTACTACGAGCAGCAAAATACCTCCTACTTCGGGCAGAACTACGATGGTCGCTATGGCTTCTACTTCCAGGCTGACCAGATGGTTTACCGCGAACCTTCGGCTGAGGCTCCCGCTCCTCTGGGCAAGGGACCTTCCGATGGCAAGTCGGTTGCCGACGGCAAGAGCTTCAAGGCTCCCGTCGCAGAAGCCAAGCCCGAGCTCTCGAAGCAGGGTCTGTCGCTCTTCAACCTCATCAGCTTCGCTCCAAAGTATAATAACCTCTATCCCTTCTACTTCCAGTCGGGTGCGGTTTACACCGGTCTCATCCCGTCCCGCGACGAGGATCAGCTCGCCTTCGCGATCGGCTACGGTTCGTACAGCTTCTACAACATCCAGGCCCTTCAGGATCGCGGTGTTGTGAACCAGCCGAACTACTCGCTCGTCCTGGAATGGGATTACCGCATCCAGATCAACAAGTGGGCGTACTTCCAGCCGATGGCTCAGTACATCATCCAGCCCAACGGCACTGGAGCCGTCCAGAACGCAACGGTTCTCGGTTTCACGTACGGCCTGACCTTCTAA
PROTEIN sequence
Length: 484
MKLPTSLPWRSFFSAAVCSTLIATSVHAGTATTTVVEESSSSDSWLKTWWEGKYMTGNWFGLRDTLEENGLTLGGKYEGAYFGVVDSAGGSRGFYDQQLTFTGDLNFGKLLKTEALEGVKAFGVVRWRDPRQASNPNQFVDASSMFNPSNWQSGTQWRMMSFGMEIGTANLLPVKDMIVLRGGWLQPNREFIDQPLSKLFSNNAINSAKGVGGNIPFSSSFSTWGGTLKVKPVEWYYAKAGLFMSYPQATATGNHGLAYQGYAQDQSQNGLFFMGETGFTPKIGSSKLPGKYAFGGYYYEQQNTSYFGQNYDGRYGFYFQADQMVYREPSAEAPAPLGKGPSDGKSVADGKSFKAPVAEAKPELSKQGLSLFNLISFAPKYNNLYPFYFQSGAVYTGLIPSRDEDQLAFAIGYGSYSFYNIQALQDRGVVNQPNYSLVLEWDYRIQINKWAYFQPMAQYIIQPNGTGAVQNATVLGFTYGLTF*