ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_333344_344

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: comp(380738..382660)

Top 3 Functional Annotations

Value Algorithm Source
type II secretory protein GspE n=2 Tax=unclassified candidate division EM 19 RepID=UPI0003B7AF79 similarity UNIREF
DB: UNIREF100
  • Identity: 44.0
  • Coverage: 414.0
  • Bit_score: 361
  • Evalue 1.10e-96
type II secretion system protein E similarity KEGG
DB: KEGG
  • Identity: 46.3
  • Coverage: 410.0
  • Bit_score: 352
  • Evalue 1.40e-94
Tax=RifOxyA12_full_Proteobacteria_58_15_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 44.1
  • Coverage: 426.0
  • Bit_score: 365
  • Evalue 1.00e-97

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RifOxyA12_full_Proteobacteria_58_15_curated → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1923
GTGGCAATTTCACGTCGGCTCACCGGCGCACTCATTCTGGCAGCCCTGATTCTGGGACATGCGGCCCTCTTTGCTGATGAGGTGGTATTCCAAGACGGAACGAAAATGCACGATGTGCGTACGGTCCTCACAGAGACCCACGTCATCGTCCACATGCCCAAGGGAGTGGCAGAGTTTCCCCGGCAAGCAATCAAATCGATCAATGGCAAAGCGCCCGGACCGGCCAAAGCCATACCCACTCCCGTCGGCAAGACGGCTTCTCCCACGCCGACCGCTACGGTGGCTCCGAGCGCAACTCCGGATGAAGTCGTTCCTGGGATGGTGCCCGAAGTGCAACAAATCCAGGATCGCCTGAAGGTCGCTCCGACTCCCACGCCAACACCGGTCGTTGCTACGACCACAACGATTTCCGCCCCACATCCCCAGTGGAAAGCCGATGTCGCAATCGCAGCCCTGTTTCTACTCACTGCTATCTGGATCTACAGCCTCCAGTGGGTACGGCGTTCGCTGGATCATCGGAGAGTCGACCCTGGGATGTGGACGAATGTCGCGATCGTGCTGCCGATCCTCGGCTCGATCCTCTACGGATTATATATCGCGATACTGCCCTTCCTGCCCAAGCAAGGCACCCGTTGGTCCCCATGGTCGACGCTGATCGCAAAACTCCGACAGCAGAACAAACCCCTCGACACCGCTCCGAAACACCGGGTTTCGCGAACAATCGAGTTCCTTGATGACGACCAAAAGGCTCTGAAGCTCAAAAAGAAGGGCGACCTTTCCTCCGGGCTCGACCTGGCCAGCGACATCCTCGAGACAGCGCTCGATCAACGTGCCAGCGATATCCACATCGAGCCGGGTAGCGAGGAATACAGGGTGCGGTTCCGCCTCGACGGTATCATGCATGAGAGATTCGCCTTCGCCACCGAGGATGGGCGGCGCATCGTCACCGCCATCAAATCTCTGGCGCAGATCGATATCTCGGAAAAGCGCAAGGCGCAGGACGGTAGATTCCGCGCACGTCTGGGCGGAGCCGGGGTGGATTTCCGCGTCGCCACAGCCAACTCGATTCACGGTGAAAAAATCGTCATCCGTGTGCTTGATCACAGCCGGGGGATTTTTGATCTGACGGCGCTCGGCATGTCGCCAGAAATGCTCGAGACCTTCCAGCAGGTAATTCATTCGCGAAACGGAATGATCCTCGCCACCGGACCCACAGGATCAGGCAAGACATCCACGCTCTATGCCGCCCTTCGCCAGCTTGACGCTGCTCGCATCAACATCATGACCATCGAGGACCCGGCCGAGTACGAACTCGTCGGAGCGACGCAGATCGCGGTGAATATCAAAGCCGGAGTGACGTATGAAAGCGGGTTGCGCTCGATCCTGCGACAGGACCCTGATGTCATCCTGGTCGGCGAAATGCGTGACGCCGAGGCGGCACAAGTCGCGGTGAGTGCCGCACTGACAGGCCATCTCGTTCTCAGCACGCTGCATACCAAGGATGCGCCGGGCACGCTGGCCCGCCTCAAAGACATGGGATTGGAGCGCTACAAACTCGGCACGGCGCTCCTCATGATCGTCGGTCAGCGCCTCGTACGAGTCCTCTGTCCGGCATGCCGCGAGGAAATCGCGTGCGAGGGCGAGGAGCTTGCCTCCATCGGGTTCAGCTTTGACCCTGGAACGGCCATCTACCGATCACAAGGCTGTCCCGAGTGCAACGGCACGGGCTTCAAAGGACGGACCGGCCTTTTCGAACTCCTCGTGCTCGACGACGACTTACGTAAAGCCGTCGGAGACGACGTCGATGAAGCAACGTTCCTTTCGATGGCCGAGGAGCGTGGCTTCCGCAGCTACCGCCAGGATGGTGCGCTGAAGGTCCTTTTGGGCATCACCACCGTGGAAGAAGTCCTCCAGGCTGTCTAG
PROTEIN sequence
Length: 641
VAISRRLTGALILAALILGHAALFADEVVFQDGTKMHDVRTVLTETHVIVHMPKGVAEFPRQAIKSINGKAPGPAKAIPTPVGKTASPTPTATVAPSATPDEVVPGMVPEVQQIQDRLKVAPTPTPTPVVATTTTISAPHPQWKADVAIAALFLLTAIWIYSLQWVRRSLDHRRVDPGMWTNVAIVLPILGSILYGLYIAILPFLPKQGTRWSPWSTLIAKLRQQNKPLDTAPKHRVSRTIEFLDDDQKALKLKKKGDLSSGLDLASDILETALDQRASDIHIEPGSEEYRVRFRLDGIMHERFAFATEDGRRIVTAIKSLAQIDISEKRKAQDGRFRARLGGAGVDFRVATANSIHGEKIVIRVLDHSRGIFDLTALGMSPEMLETFQQVIHSRNGMILATGPTGSGKTSTLYAALRQLDAARINIMTIEDPAEYELVGATQIAVNIKAGVTYESGLRSILRQDPDVILVGEMRDAEAAQVAVSAALTGHLVLSTLHTKDAPGTLARLKDMGLERYKLGTALLMIVGQRLVRVLCPACREEIACEGEELASIGFSFDPGTAIYRSQGCPECNGTGFKGRTGLFELLVLDDDLRKAVGDDVDEATFLSMAEERGFRSYRQDGALKVLLGITTVEEVLQAV*