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berkeley_reactor_200306_planktonic_scaffold_333344

Search features with annotation key words

Displaying items 301-330 of 490 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_333344_298
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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334047..334526
DNA (480bp) protein (160aa)
Putative monovalent cation/H+ antiporter subunit E n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IK03_9BACT
cation:proton antiporter
Cation:proton antiporter {ECO:0000313|EMBL:AHF93065.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_333344_299
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

334523..334834
DNA (312bp) protein (104aa)
Multiple resistance and pH regulation protein F n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IK02_9BACT
sodium:proton antiporter
Sodium:proton antiporter {ECO:0000313|EMBL:AHF93064.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_333344_300
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

334831..335184
DNA (354bp) protein (118aa)
Na+/H+ antiporter subunit n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IN98_9BACT
cation:proton antiporter
Cation:proton antiporter {ECO:0000313|EMBL:AHF93063.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_333344_301
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(335193..336062)
DNA (870bp) protein (290aa)
beta-alanine synthase (EC:3.5.1.6)
Beta-alanine synthase n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IHD7_PHYMF
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
berkeley_reactor_200306_planktonic_scaffold_333344_302
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

336168..337265
DNA (1098bp) protein (366aa)
Dihydroorotate dehydrogenase family protein {ECO:0000313|EMBL:EEF59476.1}; EC=1.3.1.2 {ECO:0000313|EMBL:EEF59476.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Dihydroorotate dehydrogenase family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKY2_9BACT
dihydropyrimidine dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_333344_303
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

337267..338640
DNA (1374bp) protein (458aa)
Dihydropyrimidinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKX9_9BACT
Dihydropyrimidinase {ECO:0000313|EMBL:EEF59473.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
dihydropyrimidinase
berkeley_reactor_200306_planktonic_scaffold_333344_304
unknown

Not on your lists

comp(338624..338950)
DNA (327bp) protein (109aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_305
Stanieria cyanosphaera, Stanieria, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

comp(338947..339705)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437) RepID=K9XM28_STAC7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ33655.1}; TaxID=111780 species="Bacteria; Cyanobacteria; Pleurocapsales; Stanieria.;" source="Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437).;"
berkeley_reactor_200306_planktonic_scaffold_333344_306
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(339751..340317)
DNA (567bp) protein (189aa)
ribosomal RNA adenine dimethylase (EC:2.1.1.-)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3C8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19239.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_333344_307
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(340318..341769)
DNA (1452bp) protein (484aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3C4_9BACT
gatA; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
berkeley_reactor_200306_planktonic_scaffold_333344_308
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(341769..342056)
DNA (288bp) protein (96aa)
gatC; glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.6 6.3.5.7)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IX78_9BACT
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_333344_309
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

342171..343196
DNA (1026bp) protein (342aa)
methyl-accepting chemotaxis sensory transducer n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746371
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ENO81268.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
chemotaxis protein
berkeley_reactor_200306_planktonic_scaffold_333344_310
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

343246..344598
DNA (1353bp) protein (451aa)
Glutamine synthetase, type III {ECO:0000313|EMBL:ADE55090.1}; EC=6.3.1.2 {ECO:0000313|EMBL:ADE55090.1};; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
glutamine synthetase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746372
glutamine synthetase
berkeley_reactor_200306_planktonic_scaffold_333344_311
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

344602..345306
DNA (705bp) protein (235aa)
GMP synthase-Glutamine amidotransferase domain (EC:6.3.5.2)
GMP synthase-Glutamine amidotransferase domain n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWL3_9BACT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
berkeley_reactor_200306_planktonic_scaffold_333344_312
Phycisphaera mikurensis, Phycisphaera, Phycisphaerales, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

345303..346094
DNA (792bp) protein (264aa)
putative creatininase (EC:3.5.2.10)
Putative creatininase {ECO:0000313|EMBL:BAM03484.1}; EC=3.5.2.10 {ECO:0000313|EMBL:BAM03484.1};; TaxID=1142394 species="Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales; Phycisphaeraceae; Phycisphaera.;" source="Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 /; FYK2301M01).;"
Creatininase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746373
berkeley_reactor_200306_planktonic_scaffold_333344_313
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

346132..347097
DNA (966bp) protein (322aa)
NlpA lipoprotein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYW6_HALNC
NlpA lipoprotein
NlpA lipoprotein {ECO:0000313|EMBL:ACX95639.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
berkeley_reactor_200306_planktonic_scaffold_333344_314

Not on your lists

347158..348195
DNA (1038bp) protein (346aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5T164_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKM17904.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nitrate ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_333344_315
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

348182..349066
DNA (885bp) protein (295aa)
ABC transporter n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035D5BAF
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACL74152.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
berkeley_reactor_200306_planktonic_scaffold_333344_316
unknown

Not on your lists

comp(349075..349581)
DNA (507bp) protein (169aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_333344_317
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(349704..350915)
DNA (1212bp) protein (404aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
tryptophan synthase subunit alpha n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746830
tryptophan synthase subunit beta
berkeley_reactor_200306_planktonic_scaffold_333344_318
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(350919..351773)
DNA (855bp) protein (285aa)
HhH-GPD family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D777_9BACT
HhH-GPD family protein {ECO:0000313|EMBL:EDY17728.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
HhH-GPD family protein
berkeley_reactor_200306_planktonic_scaffold_333344_319
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

351889..352836
DNA (948bp) protein (316aa)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Ribonuclease n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D776_9BACT
ribonuclease HIII
berkeley_reactor_200306_planktonic_scaffold_333344_320
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

352854..353387
DNA (534bp) protein (178aa)
Putative uncharacterized protein n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EK12_CORAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE54761.1}; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
berkeley_reactor_200306_planktonic_scaffold_333344_321
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

353579..358120
DNA (4542bp) protein (1514aa)
Glutamate synthase (Ferredoxin) {ECO:0000313|EMBL:EDY17293.1}; EC=1.4.7.1 {ECO:0000313|EMBL:EDY17293.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Glutamate synthase (Ferredoxin) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8A0_9BACT
gltB; glutamate synthase domain large chain
berkeley_reactor_200306_planktonic_scaffold_333344_322
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(358301..359143)
DNA (843bp) protein (281aa)
Phage SPO1 DNA polymerase-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUQ5_9BACT
Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:EDY22293.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Uracil-DNA glycosylase
berkeley_reactor_200306_planktonic_scaffold_333344_323
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(359220..360440)
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034BC99E
PEP anchor domain-containing protein {ECO:0000313|EMBL:KIJ82031.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
PEP anchor domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_333344_324
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(360437..361282)
DNA (846bp) protein (282aa)
ABC transporter-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3K2_9BACT
ABC transporter-related protein {ECO:0000313|EMBL:EDY18832.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
dppD; peptide ABC transporter ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_333344_325
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(361286..362206)
DNA (921bp) protein (307aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M3F5_GEODF
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_326
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(362206..363168)
DNA (963bp) protein (321aa)
Peptide ABC transporter, permease protein n=1 Tax=Beggiatoa sp. SS RepID=A7BKM5_9GAMM
peptide ABC transporter permease
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_333344_327
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(363170..365239)
DNA (2070bp) protein (690aa)
Putative oligopeptide ABC transporter, oligopeptide-binding protein AppA n=1 Tax=delta proteobacterium NaphS2 RepID=D8F8B0_9DELT
peptide-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
Displaying items 301-330 of 490 in total

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