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berkeley_reactor_200306_planktonic_scaffold_146823

Search features with annotation key words

Displaying items 1-30 of 129 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_146823_trna_4
unknown

Not on your lists

comp(698..770)
DNA (73bp)
transferRNA Phe
berkeley_reactor_200306_planktonic_scaffold_146823_trna_3
unknown

Not on your lists

comp(825..898)
DNA (74bp)
transferRNA Asp
berkeley_reactor_200306_planktonic_scaffold_146823_trna_2
unknown

Not on your lists

comp(926..998)
DNA (73bp)
transferRNA Glu
berkeley_reactor_200306_planktonic_scaffold_146823_1
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1283..2689
DNA (1407bp) protein (469aa)
Peptidase M23 n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5E9_9MICO
Peptidase M23 {ECO:0000313|EMBL:EIC08088.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_146823_2
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2759..3292)
DNA (534bp) protein (178aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Inorganic pyrophosphatase n=2 Tax=Microbacterium RepID=H8E5E8_9MICO
ppa; inorganic pyrophosphatase
berkeley_reactor_200306_planktonic_scaffold_146823_3
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3341..4483
DNA (1143bp) protein (381aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
tRNA(Ile)-lysidine synthase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5E7_9MICO
ATPase PP-loop
berkeley_reactor_200306_planktonic_scaffold_146823_4
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4515..5066
DNA (552bp) protein (184aa)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AH51_9MICO
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EPD86075.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypoxanthine-guanine phosphoribosyltransferase
berkeley_reactor_200306_planktonic_scaffold_146823_5
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5283..7292
DNA (2010bp) protein (670aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Microbacterium RepID=H8E5E2_9MICO
ftsH; ATP-dependent Zn protease
berkeley_reactor_200306_planktonic_scaffold_146823_6
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7302..7892
DNA (591bp) protein (197aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
GTP cyclohydrolase 1 n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5E1_9MICO
folE; GTP cyclohydrolase I
berkeley_reactor_200306_planktonic_scaffold_146823_7
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7889..8716
DNA (828bp) protein (276aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Dihydropteroate synthase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5E0_9MICO
dihydropteroate synthase
berkeley_reactor_200306_planktonic_scaffold_146823_8
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8713..9087
DNA (375bp) protein (125aa)
Dihydroneopterin aldolase n=2 Tax=Microbacterium RepID=H8E5D9_9MICO
Dihydroneopterin aldolase {ECO:0000313|EMBL:KIC59468.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
folB; dihydroneopterin aldolase
berkeley_reactor_200306_planktonic_scaffold_146823_9
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9084..9677
DNA (594bp) protein (198aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AH46_9MICO
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase {ECO:0000313|EMBL:EPD86070.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
berkeley_reactor_200306_planktonic_scaffold_146823_10
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9674..10168
DNA (495bp) protein (165aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E5D7_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC59466.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_146823_11
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10113..10781
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AAA0_9MICO
Membrane protein {ECO:0000313|EMBL:EXJ52447.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_146823_12
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10778..12514
DNA (1737bp) protein (579aa)
Membrane-flanked domain DUF304 n=2 Tax=Microbacterium RepID=H8E5D5_9MICO
Membrane protein {ECO:0000313|EMBL:EXJ52448.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_146823_13
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12511..13200
DNA (690bp) protein (230aa)
Oxidoreductase/dehydrogenase, Rossmann-like domain-containing protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5D4_9MICO
Oxidoreductase/dehydrogenase, Rossmann-like domain-containing protein {ECO:0000313|EMBL:EIC08073.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_146823_14
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13292..14842
DNA (1551bp) protein (517aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Lysine--tRNA ligase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AH41_9MICO
lysS; lysyl-tRNA synthetase (class II)
berkeley_reactor_200306_planktonic_scaffold_146823_15
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15031..15795)
DNA (765bp) protein (255aa)
Regulatory protein IclR n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5D2_9MICO
IclR family transcriptional regulator {ECO:0000313|EMBL:EXJ52451.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
gylR; glycerol operon regulatory protein
berkeley_reactor_200306_planktonic_scaffold_146823_16
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16005..16997
DNA (993bp) protein (331aa)
Dihydroxyacetone kinase, DhaK subunit n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AA94_9MICO
Dihydroxyacetone kinase, DhaK subunit {ECO:0000313|EMBL:EPD86063.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
dhaK; PTS-dependent dihydroxyacetone kinase dihydroxyacetone binding subunit DhaK
berkeley_reactor_200306_planktonic_scaffold_146823_17
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16999..17661
DNA (663bp) protein (221aa)
Dihydroxyacetone kinase, L subunit n=2 Tax=Microbacterium RepID=H8E5D0_9MICO
Dihydroxyacetone kinase, L subunit {ECO:0000313|EMBL:EIC08069.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
dihydroxyacetone kinase subunit DhaL
berkeley_reactor_200306_planktonic_scaffold_146823_18
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17658..18449
DNA (792bp) protein (264aa)
Phosphocarrier, HPr family n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5C9_9MICO
Phosphocarrier, HPr family {ECO:0000313|EMBL:EIC08068.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_146823_19
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18453..19628)
DNA (1176bp) protein (392aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5C8_9MICO
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:EIC08067.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
lipopolysaccharide biosynthesis protein
berkeley_reactor_200306_planktonic_scaffold_146823_20
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19737..19985
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BBP3_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC59456.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_146823_21
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20036..21496
DNA (1461bp) protein (487aa)
Phospholipase D/Transphosphatidylase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5C6_9MICO
Cardiolipin synthase {ECO:0000313|EMBL:KIC59455.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
cls; phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
berkeley_reactor_200306_planktonic_scaffold_146823_22
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21571..22281
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI00034BA666
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ74030.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
berkeley_reactor_200306_planktonic_scaffold_146823_23
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22480..24867
DNA (2388bp) protein (796aa)
ATPase AAA-2 domain protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5C3_9MICO
ATPase AAA-2 domain protein {ECO:0000313|EMBL:EIC08062.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
clpC; ATPase with chaperone activity, ATP-binding subunit
berkeley_reactor_200306_planktonic_scaffold_146823_24
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25125..25856)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AVC6_9MICO
Glutamine amidotransferase {ECO:0000313|EMBL:EXJ52458.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
glutamine amidotransferase
berkeley_reactor_200306_planktonic_scaffold_146823_25
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25865..26764)
DNA (900bp) protein (300aa)
Transglutaminase domain protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5C1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ52459.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_146823_26
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26761..29292)
DNA (2532bp) protein (844aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5C0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC08059.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_146823_27
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29341..29874
DNA (534bp) protein (178aa)
GCN5-related N-acetyltransferase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5B9_9MICO
N-acetylglutamate synthase {ECO:0000313|EMBL:KIC59450.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
N-acetylglutamate synthase
Displaying items 1-30 of 129 in total

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