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berkeley_reactor_200306_planktonic_scaffold_147250_73

Organism: 2019_SCN_bioreactor_200211_planktonic_Micrococcales_71_20

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(73194..73937)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=2 Tax=Microbacterium RepID=H8E1N6_9MICO similarity UNIREF
DB: UNIREF100
  • Identity: 86.0
  • Coverage: 250.0
  • Bit_score: 419
  • Evalue 2.20e-114
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:EXJ52510.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.6
  • Coverage: 247.0
  • Bit_score: 421
  • Evalue 6.10e-115
sigH; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog similarity KEGG
DB: KEGG
  • Identity: 75.1
  • Coverage: 241.0
  • Bit_score: 349
  • Evalue 4.60e-94

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Taxonomy

Microbacterium sp. MRS-1 → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 744
GTGACCGCGACACTCGCACCCGTGCGGGCGGACATCGCCGACGTAGACTGGGCGCTGATGGAAGAGCAGGCGGCCTCAGCGCCCGACGACACGGTGTCCCAGAACCCAGCGTCCGAGTACCCCGAGCCGCCGTCGGAGGACGCGTCGACGGCTATCGACGTCCGCGCGCAGTTCGAGGAGCAGGCCCTGCCGTTCATGGACCAGCTGTACGCGGCGGGCATGCGGATGACGCGGAACCCGGCGGATGCCGCGGACCTCGTCCAGGAGACCTTCGTCAAGGCGTTCGCGTCGTGGTCCTCCTTCACGCAGGGGACCAACCTCAAGGCGTGGCTGTACCGCATCCTCACCAACACGTACATCAACACGTATCGCAAGAAGCAGCGCGAGCCCTATCAGGGCACGATCGACGACCTCGAGGACTGGCAGCTCGGCGGTGCCGAGTCGACCACGGCCACGAGCAGCCGCTCCGCCGAGGCGGAGGCCATCGACCACATGCCCGCGTCGGTGGTCAAGGACGCGCTGCAGTCGATCCCCGAGGACTTCCGGCTGGCGGTCTACCTCGCGGACGTCGAAGGCTTCGCGTATCAGGAGATCGCGGACATCATGAAAACACCCATCGGCACGGTCATGAGCCGTCTGCACCGTGGCAGACGGATGCTGCGCGACCTCCTCGCCGACTACGCACGCGAGCGCGGCATCGATGTGCCGGCGCCCGCCACTTCTTCATCAGGGAGCAGGAAATGA
PROTEIN sequence
Length: 248
VTATLAPVRADIADVDWALMEEQAASAPDDTVSQNPASEYPEPPSEDASTAIDVRAQFEEQALPFMDQLYAAGMRMTRNPADAADLVQETFVKAFASWSSFTQGTNLKAWLYRILTNTYINTYRKKQREPYQGTIDDLEDWQLGGAESTTATSSRSAEAEAIDHMPASVVKDALQSIPEDFRLAVYLADVEGFAYQEIADIMKTPIGTVMSRLHRGRRMLRDLLADYARERGIDVPAPATSSSGSRK*