ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_147250

Search features with annotation key words

Displaying items 1-30 of 252 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_147250_1
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..808)
DNA (807bp) protein (269aa)
Peptide ABC transporter ATP-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2YV13_9MICO
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAD34468.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
ABC transporter ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_147250_2
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(805..1743)
DNA (939bp) protein (313aa)
Peptide ABC transporter permease protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XNH1_9MICO
Peptide ABC transporter permease protein {ECO:0000313|EMBL:GAD34467.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
peptide ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_147250_3
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1775..2746)
DNA (972bp) protein (324aa)
Dipeptide/oligopeptide/nickel ABC transporter permease protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XA93_9MICO
Dipeptide/oligopeptide/nickel ABC transporter permease protein {ECO:0000313|EMBL:GAD34466.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
peptide ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_147250_4
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2778..4394)
DNA (1617bp) protein (539aa)
Dipeptide ABC transporter substrate-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XN04_9MICO
Dipeptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAD34465.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
ABC-type dipeptide/oligopeptide transport system
berkeley_reactor_200306_planktonic_scaffold_147250_5
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4570..6033)
DNA (1464bp) protein (488aa)
Uncharacterized conserved protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N722_MICTS
UPF0061 protein RL72_02904 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_147250_6
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6044..7987)
DNA (1944bp) protein (648aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XN01_9MICO
Uncharacterized protein {ECO:0000313|EMBL:GAD34460.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_147250_7
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7984..9345)
DNA (1362bp) protein (454aa)
Coenzyme F420-dependent N5,N10-methylenetetrahydromethanopterin reductase n=1 Tax=Microbacterium sp. TS-1 RepID=U2YMY5_9MICO
F420-dependent methylene-tetrahydromethanopterin reductase {ECO:0000313|EMBL:KEP76040.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
berkeley_reactor_200306_planktonic_scaffold_147250_8
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9342..10547)
DNA (1206bp) protein (402aa)
Putative flavin-dependent oxidoreductase n=1 Tax=Microbacterium sp. TS-1 RepID=U2YV01_9MICO
Putative flavin-dependent oxidoreductase {ECO:0000313|EMBL:GAD34458.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
berkeley_reactor_200306_planktonic_scaffold_147250_9
Saccharomonospora viridis, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10682..11884
DNA (1203bp) protein (401aa)
Cystathionine gamma-synthase n=1 Tax=Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) RepID=C7MUF2_SACVD
cystathionine gamma-synthase
Cystathionine gamma-synthase {ECO:0000313|EMBL:ACU96931.1}; TaxID=471857 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 /; NBRC 12207 / P101).;"
berkeley_reactor_200306_planktonic_scaffold_147250_10
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11881..12669
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A7Q3_9MICO
GCN5 family acetyltransferase {ECO:0000313|EMBL:KIC60311.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
acetyltransferase
berkeley_reactor_200306_planktonic_scaffold_147250_11
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12741..13763
DNA (1023bp) protein (341aa)
Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N7L4_MICTS
coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase {ECO:0000313|EMBL:BAJ74270.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
berkeley_reactor_200306_planktonic_scaffold_147250_12
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13773..14627)
DNA (855bp) protein (285aa)
sseB; putative thiosulfate sulfurtransferase (EC:2.8.1.1)
O-acetylhomoserine sulfhydrylase n=1 Tax=Microbacterium sp. TS-1 RepID=U2XL73_9MICO
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
berkeley_reactor_200306_planktonic_scaffold_147250_13
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14722..15123)
DNA (402bp) protein (134aa)
Protein-tyrosine phosphatase, low molecular weight n=2 Tax=Microbacterium RepID=H8E676_9MICO
Heat-shock protein HtpX {ECO:0000313|EMBL:EXJ52279.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
arsenate reductase
berkeley_reactor_200306_planktonic_scaffold_147250_14
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15323..15604
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDD0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86649.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
berkeley_reactor_200306_planktonic_scaffold_147250_15
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15680..17791
DNA (2112bp) protein (704aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1S7_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC09097.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_147250_16
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17803..18123)
DNA (321bp) protein (107aa)
ligand-binding protein SH3 n=1 Tax=Microbacterium sp. 292MF RepID=UPI000366F50D
Ligand-binding protein SH3 {ECO:0000313|EMBL:KIC58310.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
ligand-binding protein SH3
berkeley_reactor_200306_planktonic_scaffold_147250_17
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18224..19084)
DNA (861bp) protein (287aa)
Abortive infection protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1S6_9MICO
Abortive infection protein {ECO:0000313|EMBL:EIC09096.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
metal-dependent membrane protease
berkeley_reactor_200306_planktonic_scaffold_147250_18
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19081..19833)
DNA (753bp) protein (251aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AC03_9MICO
S-adenosylmethionine-dependent methyltransferase
berkeley_reactor_200306_planktonic_scaffold_147250_19
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19864..20712)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDD6_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC58308.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_147250_20
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20886..22877
DNA (1992bp) protein (664aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1S2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC58307.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_147250_21
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22956..23693
DNA (738bp) protein (246aa)
PspA/IM30 family protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1S1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC58306.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
phage shock protein A (IM30), suppresses sigma54-dependent transcription
berkeley_reactor_200306_planktonic_scaffold_147250_22
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23770..24582
DNA (813bp) protein (271aa)
Arginase/agmatinase/formiminoglutamase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1S0_9MICO
Arginase {ECO:0000313|EMBL:KIC58305.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
arginase/agmatinase/formimionoglutamate hydrolase, arginase family
berkeley_reactor_200306_planktonic_scaffold_147250_23
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24579..25061
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AC10_9MICO
Fe-S osidoreductase {ECO:0000313|EMBL:EXJ52539.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Fe-S oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_147250_24
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25048..25599)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDE4_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86659.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
siderophore-interacting protein
berkeley_reactor_200306_planktonic_scaffold_147250_25
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25628..26338)
DNA (711bp) protein (237aa)
Protein tyrosine/serine phosphatase n=2 Tax=Microbacterium RepID=H8E1R7_9MICO
Protein tyrosine/serine phosphatase {ECO:0000313|EMBL:EIC09087.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
protein tyrosine/serine phosphatase
berkeley_reactor_200306_planktonic_scaffold_147250_26
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26335..26838)
DNA (504bp) protein (168aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Alkylhydroperoxidase like protein, AhpD family n=2 Tax=Microbacterium RepID=H8E1R6_9MICO
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_147250_27
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26997..27935
DNA (939bp) protein (313aa)
Alpha/beta hydrolase fold containing protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1R5_9MICO
Alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:EIC09085.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hydrolase or acyltransferase
berkeley_reactor_200306_planktonic_scaffold_147250_28
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28100..29611
DNA (1512bp) protein (504aa)
ABC-type transporter, periplasmic subunit n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1R4_9MICO
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIC58299.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
dipeptide ABC transporter periplasmic protein
berkeley_reactor_200306_planktonic_scaffold_147250_29
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29608..30558
DNA (951bp) protein (317aa)
Peptide/nickel transport system permease n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDF0_9MICO
ABC transporter permease {ECO:0000313|EMBL:KIC58298.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
dipeptide/oligopeptide/nickel ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_147250_30
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30555..31433
DNA (879bp) protein (293aa)
Peptide/nickel transport system permease n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AIQ7_9MICO
Peptide ABC transporter permease {ECO:0000313|EMBL:EXJ52532.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
dipeptide/oligopeptide/nickel ABC transporter permease
Displaying items 1-30 of 252 in total

View Taxonomy