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berkeley_reactor_200306_planktonic_scaffold_144812_43

Organism: 2019_SCN_bioreactor_200211_planktonic_Micrococcales_71_20

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 42532..43395

Top 3 Functional Annotations

Value Algorithm Source
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1610703 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. SPG23.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.0
  • Coverage: 278.0
  • Bit_score: 328
  • Evalue 4.80e-87
hypothetical protein n=1 Tax=Arthrobacter sp. 162MFSha1.1 RepID=UPI000373DC3B similarity UNIREF
DB: UNIREF100
  • Identity: 58.9
  • Coverage: 275.0
  • Bit_score: 325
  • Evalue 4.90e-86
shikimate 5-dehydrogenase similarity KEGG
DB: KEGG
  • Identity: 57.0
  • Coverage: 286.0
  • Bit_score: 318
  • Evalue 1.30e-84

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Taxonomy

Arthrobacter sp. SPG23 → Arthrobacter → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 864
ATGACACGCTCCTACCTCGTCGGACTCATCGGCTCGGGGATCGGGTCGTCGTCGACGCCCGCCCTGCACGAGAGCGAGGCCGACGCGCACGGCGTGCGCTACCTCTACCGCACGATCGACATCGACGCCCTCGGCCGGACGGCCGCCGACGGCGCCGAACTGGTGCGGCAGGCGCAGGAACTCGGCTACGACGCACTGAACATCACCCACCCCTGCAAGCAGACCGTCCTGTCGGCGCTCGACGAGCTCTCCCCCGACGCCGAGCTGCTGGGCGCCGTGAACACGGTGGTGTTCCGCGACGGCCGCGCGATCGGCGCGAACACCGACCATTCGGGCTTCGCCCAGGGCCTGCGCGACGGGCTGGACTCCCCCGCGCTCGACCGCGTCGTCCTCCTCGGCTCGGGCGGAGCGGGCTCGGCCATCGCCTTCGCCCTCCTGAACGCCGGCACGCGGGTGCTGTCGGTCTTCGACCCCGTCGTCGAACGCGCCCGGGCGGTGCGCACGGCGCTGGGCCCGGCCTTCCCGGGAGCGGAGATCGTGGCGATCGGCGCCGACGAGCTCGCGGCGGCGATCGGAGCGGCCGACGGACTGGTCAACGCGACCCCCATCGGCATGGTGGGCCACCCCGGCATCCCTGTCGACCCGTCGCTGCTGCACTCCGGCCTCTGGGTCGCCGACGCGATCTACCGGCCGCTGCGCACGGAGCTGATCGAGACGGCGCAGGCCCTCGGGTGCGCGGTTCTCGACGGCGGGCGGATGGTGGTCGGCCAGGCCGCCGACACCTTCCGGCTGATCACGGGACGGGACGCGGATCCGGAGCGGATGCGGGCCCGCTTCCTCGCGCTGACGGGCGCGACTCAGTAG
PROTEIN sequence
Length: 288
MTRSYLVGLIGSGIGSSSTPALHESEADAHGVRYLYRTIDIDALGRTAADGAELVRQAQELGYDALNITHPCKQTVLSALDELSPDAELLGAVNTVVFRDGRAIGANTDHSGFAQGLRDGLDSPALDRVVLLGSGGAGSAIAFALLNAGTRVLSVFDPVVERARAVRTALGPAFPGAEIVAIGADELAAAIGAADGLVNATPIGMVGHPGIPVDPSLLHSGLWVADAIYRPLRTELIETAQALGCAVLDGGRMVVGQAADTFRLITGRDADPERMRARFLALTGATQ*