ggKbase home page

scn_reactorb_scaffold_9274

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scn_reactorb_scaffold_9274_1
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1360)
DNA (1359bp) protein (453aa)
TonB-dependent receptor n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6APS5_DELSC
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AEF91675.1}; Flags: Precursor;; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
scn_reactorb_scaffold_9274_2
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1395..2279)
DNA (885bp) protein (295aa)
Transcriptional regulator n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SDL2_METPP
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ABM93651.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
scn_reactorb_scaffold_9274_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2389..3243)
DNA (855bp) protein (285aa)
Twin-arginine translocation pathway signal n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IX01_RHOP2
twin-arginine translocation pathway signal
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABD07259.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
scn_reactorb_scaffold_9274_4
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3260..5428)
DNA (2169bp) protein (723aa)
Ferrichrome-iron receptor n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AD04_COLFT
ferrichrome-iron receptor
Ferrichrome-iron receptor {ECO:0000313|EMBL:AEK63109.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
scn_reactorb_scaffold_9274_5
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5679..6047)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WX50_DELAC
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
scn_reactorb_scaffold_9274_6
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6396..6962)
DNA (567bp) protein (189aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RZ25_9BURK
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EFV93824.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
scn_reactorb_scaffold_9274_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6949..7104)
DNA (156bp) protein (52aa)
Cyd operon protein YbgT n=1 Tax=Variovorax sp. CF313 RepID=J2L2Y9_9BURK
Variovorax paradoxus strain MEDvA23 contig_132, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16740.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
cyd operon protein YbgT
scn_reactorb_scaffold_9274_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7130..8284)
DNA (1155bp) protein (385aa)
cytochrome BD oxidase subunit II n=1 Tax=Acidovorax avenae RepID=UPI0002D44E8F
Cytochrome D ubiquinol oxidase subunit II {ECO:0000313|EMBL:EKF42541.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
cytochrome d ubiquinol oxidase, subunit II
scn_reactorb_scaffold_9274_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8281..9906)
DNA (1626bp) protein (542aa)
cytochrome BD oxidase subunit I n=1 Tax=Acidovorax avenae RepID=UPI0002EF4D09
Cytochrome bd-type quinol oxidase, subunit 1 {ECO:0000313|EMBL:GAD24490.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cytochrome bd ubiquinol oxidase subunit I
scn_reactorb_scaffold_9274_10
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9943..11664)
DNA (1722bp) protein (574aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DMW7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU84561.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
putative thiol reductant ABC exporter, CydC subunit
scn_reactorb_scaffold_9274_11
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11661..13394)
DNA (1734bp) protein (578aa)
Thiol reductant ABC exporter, CydD subunit n=1 Tax=Massilia timonae CCUG 45783 RepID=K9E0Y7_9BURK
Thiol reductant ABC exporter, CydD subunit {ECO:0000313|EMBL:EKU84562.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
cydD; thiol reductant ABC exporter, CydD subunit
scn_reactorb_scaffold_9274_12
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13499..13885)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DJR0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU84563.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
lipoprotein
scn_reactorb_scaffold_9274_13
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14130..14642
DNA (513bp) protein (171aa)
MarR family transcriptional regulator n=1 Tax=Acidovorax avenae RepID=UPI0002F75B53
Uncharacterized protein {ECO:0000313|EMBL:EKU84564.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
predicted transcriptional regulators
scn_reactorb_scaffold_9274_14
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14644..15036
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DJR0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU84563.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
lipoprotein
scn_reactorb_scaffold_9274_15
unknown

Not on your lists

15140..15346
DNA (207bp) protein (69aa)

This feature has no annotations

scn_reactorb_scaffold_9274_16
unknown

Not on your lists

15343..15528
DNA (186bp) protein (62aa)

This feature has no annotations

scn_reactorb_scaffold_9274_17
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15556..16962
DNA (1407bp) protein (469aa)
cytochrome C n=1 Tax=Methyloferula stellata RepID=UPI0003678465
cytochrome c
Putative Cytochrome c {ECO:0000313|EMBL:CCB64913.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
scn_reactorb_scaffold_9274_18
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16967..18190
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037D9B5E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB64914.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
scn_reactorb_scaffold_9274_19
Alcanivorax sp. 19-m-6, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18207..18878
DNA (672bp) protein (224aa)
Cytochrome C n=1 Tax=Alcanivorax sp. P2S70 RepID=U7FSN7_9GAMM
Cytochrome c5 {ECO:0000313|EMBL:KGD64900.1}; TaxID=1177154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. 19-m-6.;"
putative cytochrome c5
scn_reactorb_scaffold_9274_20
unknown

Not on your lists

19040..19234
DNA (195bp) protein (65aa)

This feature has no annotations

scn_reactorb_scaffold_9274_21
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19477..20514)
DNA (1038bp) protein (346aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Chryseobacterium taeanense RepID=UPI00030F88B7
5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase {ECO:0000313|EMBL:EPD42741.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
vitamin-B12 independent methionine synthase
scn_reactorb_scaffold_9274_22
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20605..21588)
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KPH9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE53078.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
scn_reactorb_scaffold_9274_23
Burkholderia sp. MSh2, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21631..22224)
DNA (594bp) protein (198aa)
msuE1; NADPH-dependent FMN reductase (EC:1.5.1.29)
NADPH-dependent FMN reductase n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2E7Y4_9BURK
NADH-dependent FMN reductase {ECO:0000313|EMBL:KEZ06642.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
scn_reactorb_scaffold_9274_24
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22320..23240
DNA (921bp) protein (307aa)
Transcriptional activator MetR n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4Y0V4_ALCXX
Transcriptional activator MetR
Transcriptional activator MetR {ECO:0000313|EMBL:CCH09212.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
scn_reactorb_scaffold_9274_25
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23237..23905
DNA (669bp) protein (223aa)
Uncharacterized protein n=4 Tax=cellular organisms RepID=A9BTP4_DELAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF09862.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
scn_reactorb_scaffold_9274_26
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23997..24899
DNA (903bp) protein (301aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
Methylenetetrahydrofolate reductase n=4 Tax=cellular organisms RepID=B9T9X5_RICCO
5,10-methylenetetrahydrofolate reductase
scn_reactorb_scaffold_9274_27
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25403..25939)
DNA (537bp) protein (179aa)
inorganic diphosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Inorganic pyrophosphatase n=2 Tax=Acidovorax RepID=A1W6S1_ACISJ
scn_reactorb_scaffold_9274_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26200..28275
DNA (2076bp) protein (692aa)
pyrophosphate-energized proton pump (EC:3.6.1.1)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G7F6_ALIDK
scn_reactorb_scaffold_9274_29
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28406..30703
DNA (2298bp) protein (766aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002375ED9
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scn_reactorb_scaffold_9274_30
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30875..31441
DNA (567bp) protein (189aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AQS2_DELSC
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:EZP47986.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
Displaying items 1-30 of 37 in total

View Taxonomy