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scn_reactorb_scaffold_20309_33

Organism: SCN_bioreactor_inoc_reactorb_Betaproteobacteria_68_25

near complete RP 50 / 55 BSCG 51 / 51 ASCG 14 / 38 MC: 1
Location: comp(38759..39313)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8Z1_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 58.6
  • Coverage: 169.0
  • Bit_score: 181
  • Evalue 5.70e-43
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 58.6
  • Coverage: 169.0
  • Bit_score: 181
  • Evalue 1.60e-43
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADU37314.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.6
  • Coverage: 169.0
  • Bit_score: 181
  • Evalue 7.90e-43

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 555
GTGTTCGAGCGTTACTACCGCGAGCTGCTGGGCTTTCTCGCGCGCAAGGTGGGCGACCGCGACGTCGCCGCCGACCTGGCGCAGGAGAGCTATGCCCGCGTCTATGCCGCCTCCGGCCGCGAGCGCGTGGCGCAGCCCCGGGCGCTGCTCTACGCCACCGCGCGCAACCTCGTGACCGACCACTACCGCCGCGCCAGCGTGCGCGCCGGGGTGGAAGTCGGCAGCGCGGCGGACGGCGCCGAAGCGCCCGGCGGCGGCCTGGGCCCCGCCTCGCTGGAGCCCGAGGCGCTGCTGGCCGGGCGCCAGCGGCTTGCCGCCATCGAGCAGGCGCTGGCCGCGCTGCCGCCGCGCCCGCGCCAGGCCTTCGTGTTCTACAAGCTCGACGGCCTGAGCCGCGCCGAAGTCGCGCGGAAAATGGGCATCAGCGTCAAGACCGTCGAAACGCACCTGGAAGTCGCCATGCAGGCCTGCCTGGCGCGGCTGCAGGCGCTCGACGGCGCCGCGCCTGCCCCCACCGCTGCGCCTGCGCGCAAGAAGCCTCGCCCCGCCCCATGA
PROTEIN sequence
Length: 185
VFERYYRELLGFLARKVGDRDVAADLAQESYARVYAASGRERVAQPRALLYATARNLVTDHYRRASVRAGVEVGSAADGAEAPGGGLGPASLEPEALLAGRQRLAAIEQALAALPPRPRQAFVFYKLDGLSRAEVARKMGISVKTVETHLEVAMQACLARLQALDGAAPAPTAAPARKKPRPAP*