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scn_reactorb_scaffold_55730

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scn_reactorb_scaffold_55730_1
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..225
DNA (225bp) protein (75aa)
Transketolase {ECO:0000313|EMBL:EHJ02300.1}; EC=2.2.1.1 {ECO:0000313|EMBL:EHJ02300.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
tktB; transketolase subunit B (EC:2.2.1.1)
Transketolase n=1 Tax=Clostridium sp. DL-VIII RepID=G7MAP1_9CLOT
scn_reactorb_scaffold_55730_2
Mollicutes bacterium HR2, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(278..1267)
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium HF0500_16O16 RepID=E0XYG2_9BACT
Glycosyl transferase family 8 {ECO:0000313|EMBL:KFZ27587.1}; TaxID=1541960 species="Bacteria; Tenericutes; Mollicutes.;" source="Mollicutes bacterium HR2.;"
Glycosyl transferase family 8
scn_reactorb_scaffold_55730_3
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1503..2324
DNA (822bp) protein (274aa)
Formamidopyrimidine-DNA glycosylase n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KAF1_9FIRM
Formamidopyrimidine-DNA glycosylase {ECO:0000313|EMBL:EGN40386.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
formamidopyrimidine-DNA glycolase
scn_reactorb_scaffold_55730_4
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2409..2843
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CB64_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOC99544.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
scn_reactorb_scaffold_55730_5
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3168..3854
DNA (687bp) protein (229aa)
Cell division ATP-binding protein FtsE n=6 Tax=Thermoanaerobacter RepID=B0K669_THEPX
Uncharacterized protein {ECO:0000313|EMBL:KGG80245.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
ftsE; cell division ATP-binding protein FtsE
scn_reactorb_scaffold_55730_6
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3844..4746
DNA (903bp) protein (301aa)
Cell division protein FtsX n=1 Tax=Clostridium ultunense Esp RepID=M1ZFD4_9CLOT
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
hypothetical protein
scn_reactorb_scaffold_55730_7
unknown

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4762..5052
DNA (291bp) protein (97aa)

This feature has no annotations

scn_reactorb_scaffold_55730_8
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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5133..5840
DNA (708bp) protein (236aa)
Peptidase M23 id=2230962 bin=GWB2_Clostridiales_37_7 species=Clostridiaceae bacterium L21-TH-D2 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
peptidase M23B
Tax=GWB2_Clostridiales_37_7_curated
scn_reactorb_scaffold_55730_9
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5884..7434)
DNA (1551bp) protein (517aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
ftsH1; ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CWA6_9CLOT
scn_reactorb_scaffold_55730_10
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7962..8294
DNA (333bp) protein (111aa)
Translation initiation factor IF-3 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CQG9_9CLOT
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
translation initiation factor IF-3 domain-containing protein
scn_reactorb_scaffold_55730_11
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8328..8522
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AWB3_9CLOT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
rpmI; 50S ribosomal protein L35
scn_reactorb_scaffold_55730_12
Peptoniphilus sp. oral taxon 386, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8550..8894
DNA (345bp) protein (115aa)
50S ribosomal protein L20 n=1 Tax=Peptoniphilus sp. oral taxon 386 str. F0131 RepID=D7N637_9FIRM
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=575609 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 386 str. F0131.;"
rplT; ribosomal protein L20
scn_reactorb_scaffold_55730_13
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8959..9495)
DNA (537bp) protein (179aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
quorum-sensing autoinducer 2 (AI-2), LuxS (EC:4.4.1.21)
S-ribosylhomocysteine lyase n=3 Tax=Clostridium carboxidivorans P7 RepID=D6MHY2_9CLOT
scn_reactorb_scaffold_55730_14
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9514..10302)
DNA (789bp) protein (263aa)
rRNA methylase, putative, group 3 n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUD3_CLOCD
rRNA methylase, putative, group 3
rRNA methylase, putative, group 3 {ECO:0000313|EMBL:AEV69565.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
scn_reactorb_scaffold_55730_15
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10545..11261
DNA (717bp) protein (239aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VTV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY84775.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
scn_reactorb_scaffold_55730_16
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11282..12220
DNA (939bp) protein (313aa)
Polymer-forming cytoskeletal family protein n=1 Tax=Clostridium sordellii ATCC 9714 RepID=T0CMX3_CLOSO
Uncharacterized protein {ECO:0000313|EMBL:KJU73053.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
polymer-forming cytoskeletal family protein
scn_reactorb_scaffold_55730_17
unknown

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comp(12335..12784)
DNA (450bp) protein (150aa)

This feature has no annotations

scn_reactorb_scaffold_55730_18
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13493..14269
DNA (777bp) protein (259aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
metF; 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=B1L1W9_CLOBM
scn_reactorb_scaffold_55730_19
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14281..14946
DNA (666bp) protein (222aa)
metH1; vitamin B12-dependent methionine synthase MetH (EC:2.1.1.13)
Vitamin B12-dependent methionine synthase MetH {ECO:0000313|EMBL:AGF55379.1}; EC=2.1.1.13 {ECO:0000313|EMBL:AGF55379.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Vitamin B12-dependent methionine synthase MetH n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MBS1_9CLOT
scn_reactorb_scaffold_55730_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14943..17321
DNA (2379bp) protein (793aa)
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Clostridium botulinum (strain 657 / Type Ba4) RepID=C3KW30_CLOB6
5-methyltetrahydrofolate:homocysteine S-methyltransferase
B12 binding domain protein {ECO:0000313|EMBL:AJE11558.1}; TaxID=1408283 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum CDC_1436.;"
scn_reactorb_scaffold_55730_21
Pyramidobacter piscolens, Pyramidobacter, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

17470..18156
DNA (687bp) protein (229aa)
Methyltransferase domain protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y222_9BACT
Methyltransferase domain protein {ECO:0000313|EMBL:EFB91666.1}; TaxID=352165 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Pyramidobacter.;" source="Pyramidobacter piscolens W5455.;"
putative methyltransferase type 12
scn_reactorb_scaffold_55730_22
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18266..20728)
DNA (2463bp) protein (821aa)
Peptidase M56 family protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FTI2_9CLOT
Peptidase M56 family protein {ECO:0000313|EMBL:EMS73641.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
peptidase M56 BlaR1
scn_reactorb_scaffold_55730_23
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20715..21092)
DNA (378bp) protein (126aa)
Putative transcriptional regulator n=1 Tax=Clostridium termitidis CT1112 RepID=S0FYJ8_9CLOT
Putative transcriptional regulator {ECO:0000313|EMBL:EMS73673.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
putative transcriptional regulator
scn_reactorb_scaffold_55730_24
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21512..22171
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003653766
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFV06707.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
scn_reactorb_scaffold_55730_25
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22340..22819)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K9M7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN40866.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
scn_reactorb_scaffold_55730_26
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23124..23684)
DNA (561bp) protein (187aa)
Transcriptional regulator, TetR family n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MG83_ALKOO
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABW18811.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
scn_reactorb_scaffold_55730_27
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23845..24234
DNA (390bp) protein (130aa)
ABC transporter related protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1T849_9CLOT
ABC transporter related protein {ECO:0000313|EMBL:EGD49647.1}; Flags: Precursor;; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
antimicrobial peptide ABC transporter ATPase
scn_reactorb_scaffold_55730_28
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24180..24488
DNA (309bp) protein (103aa)
ABC transporter related protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1T849_9CLOT
ABC transporter related protein {ECO:0000313|EMBL:EGD49647.1}; Flags: Precursor;; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
ABC transporter
scn_reactorb_scaffold_55730_29
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24494..27532
DNA (3039bp) protein (1013aa)
Uncharacterized protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I5F3_CLOCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL76689.1}; Flags: Precursor;; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
scn_reactorb_scaffold_55730_30
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27642..28454)
DNA (813bp) protein (271aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRF5_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX42029.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Displaying items 1-30 of 33 in total

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