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scn_reactorb_scaffold_56466

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scn_reactorb_scaffold_56466_1
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..3323
DNA (3321bp) protein (1107aa)
Penicillin-binding protein 2 (PBP-2) n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CBZ1_9CLOT
Penicillin-binding protein 2 (PBP-2) {ECO:0000313|EMBL:EOC99824.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
penicillin-binding protein, transpeptidase superfamily protein
scn_reactorb_scaffold_56466_2
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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3394..4098
DNA (705bp) protein (235aa)
Site-determining protein n=1 Tax=Dorea sp. 5-2 RepID=R9N954_9FIRM
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
minD; septum site-determining protein MinD
scn_reactorb_scaffold_56466_3
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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4248..4970
DNA (723bp) protein (241aa)
Membrane protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CBY6_9CLOT
Membrane protein {ECO:0000313|EMBL:EOC99819.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP
scn_reactorb_scaffold_56466_4
Clostridium sp. CAG:492, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4970..5437
DNA (468bp) protein (156aa)
Peptidase M50 n=1 Tax=Clostridium sp. CAG:492 RepID=R5YV76_9CLOT
Peptidase M50 {ECO:0000313|EMBL:CDA30715.1}; TaxID=1262813 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:492.;"
sporulation protein IVFB-like protein
scn_reactorb_scaffold_56466_5
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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5470..6582
DNA (1113bp) protein (371aa)
Epoxyqueuosine (OQ) reductase QueG n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CT77_9CLOT
Epoxyqueuosine (OQ) reductase QueG {ECO:0000313|EMBL:EOC99898.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
scn_reactorb_scaffold_56466_6
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6601..7233
DNA (633bp) protein (211aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III n=1 Tax=Clostridium intestinale URNW RepID=U2NKF9_9CLOT
scn_reactorb_scaffold_56466_7
Leptotrichia sp. oral taxon 215, Leptotrichia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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7237..7779
DNA (543bp) protein (181aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=1321779 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Leptotrichia.;" source="Leptotrichia sp. oral taxon 215 str. W9775.;"
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Leptotrichia sp. oral taxon 215 str. W9775 RepID=U2SVZ9_9FUSO
methylated-DNA--protein-cysteine methyltransferase
scn_reactorb_scaffold_56466_8
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7788..8258
DNA (471bp) protein (157aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GLQ7_EUBLK
RNA methyltransferase
scn_reactorb_scaffold_56466_9
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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8882..9256
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000365DFF4
GrdX protein {ECO:0000313|EMBL:KHS57138.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
component of glycine reductase complex
scn_reactorb_scaffold_56466_10
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9333..10613
DNA (1281bp) protein (427aa)
Glycine reductase complex component B subunits alpha and beta {ECO:0000313|EMBL:CCQ95243.1}; EC=1.21.4.2 {ECO:0000313|EMBL:CCQ95243.1};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
Glycine/sarcosine/betaine reductase component B subunits. (EC:1.21.4.2)
Glycine reductase complex component B subunits alpha and beta n=1 Tax=Clostridium ultunense Esp RepID=M1ZBV0_9CLOT
scn_reactorb_scaffold_56466_11
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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10630..11934
DNA (1305bp) protein (435aa)
Glycine reductase component B gamma subunit {ECO:0000313|EMBL:EOC99619.1}; EC=1.21.4.2 {ECO:0000313|EMBL:EOC99619.1};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
selenoprotein B (EC:1.21.4.2)
Glycine reductase component B gamma subunit n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CBC8_9CLOT
scn_reactorb_scaffold_56466_12
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12125..13060
DNA (936bp) protein (312aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
thioredoxin-disulfide reductase (EC:1.8.1.9)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000380D406
scn_reactorb_scaffold_56466_13
Oribacterium sp. oral taxon 108, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13126..13443
DNA (318bp) protein (106aa)
Thioredoxin n=2 Tax=Oribacterium RepID=F5T7W3_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=904296 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 108 str. F0425.;"
thioredoxin domain-containing protein
scn_reactorb_scaffold_56466_14
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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13522..13995
DNA (474bp) protein (158aa)
Glycine/sarcosine/betaine reductase complex component A {ECO:0000256|HAMAP-Rule:MF_00826}; EC=1.21.4.2 {ECO:0000256|HAMAP-Rule:MF_00826};; EC=1.21.4.3 {ECO:0000256|HAMAP-Rule:MF_00826};; EC=1.21.4.4 {ECO:0000256|HAMAP-Rule:MF_00826};; Selenoprotein PA {ECO:0000256|HAMAP-Rule:MF_00826}; Thioredoxin reductase complex selenoprotein A {ECO:0000256|HAMAP-Rule:MF_00826}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
grdA; glycine/sarcosine/betaine reductase complex protein A (EC:1.21.4.2)
Glycine/sarcosine/betaine reductase complex component A n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0JRX7_9FIRM
scn_reactorb_scaffold_56466_15
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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comp(14283..15017)
DNA (735bp) protein (245aa)
Tax=RBG_16_Chloroflexi_57_8_curated
scn_reactorb_scaffold_56466_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15358..15639
DNA (282bp) protein (94aa)
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III n=1 Tax=Clostridium sp. CAG:299 RepID=R6YWQ1_9CLOT
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III {ECO:0000313|EMBL:CDD38355.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III.
scn_reactorb_scaffold_56466_17
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15652..16827
DNA (1176bp) protein (392aa)
glycine reductase (EC:1.21.4.2)
Glycine reductase {ECO:0000313|EMBL:ABW18507.1}; EC=1.21.4.2 {ECO:0000313|EMBL:ABW18507.1};; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
Glycine reductase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MFW9_ALKOO
scn_reactorb_scaffold_56466_18
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16981..18177
DNA (1197bp) protein (399aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SU39_SYNGF
integral membrane sensor signal transduction histidine kinase
Displaying 18 items

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