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RifSed_csp1_19ft_2_scaffold_4002

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_2_scaffold_4002_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2..937)
DNA (936bp) protein (312aa)
Daunorubicin resistance ABC transporter ATPase subunit n=1 Tax=Methanoregula boonei (strain 6A8) RepID=A7I5D5_METB6
Daunorubicin resistance ABC transporter ATP-binding subunit {ECO:0000313|EMBL:KCZ72482.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
daunorubicin resistance ABC transporter ATPase subunit
RifSed_csp1_19ft_2_scaffold_4002_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1215..2351)
DNA (1137bp) protein (379aa)
Archaeal fructose 1,6-bisphosphatase {ECO:0000313|EMBL:KCZ72460.1}; EC=3.1.3.11 {ECO:0000313|EMBL:KCZ72460.1};; EC=4.1.2.13 {ECO:0000313|EMBL:KCZ72460.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Uncharacterized protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RYX0_FERPA rbh
hypothetical protein rbh
RifSed_csp1_19ft_2_scaffold_4002_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2375..3241)
DNA (867bp) protein (289aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=uncultured archaeon RepID=Q2Y4Q5_9ARCH
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative FKBP-type peptidyl-prolyl cis trans isomerase 2
RifSed_csp1_19ft_2_scaffold_4002_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3338..4006
DNA (669bp) protein (223aa)
Ribonuclease P protein component 3 {ECO:0000256|HAMAP-Rule:MF_00756}; Short=RNase P component 3 {ECO:0000256|HAMAP-Rule:MF_00756};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00756};; Rpp30 {ECO:0000256|HAMAP-Rule:MF_00756}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component 3 n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XML5_METZD
RifSed_csp1_19ft_2_scaffold_4002_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4003..4482
DNA (480bp) protein (160aa)
Ribonuclease P protein component 2 {ECO:0000256|HAMAP-Rule:MF_00755}; Short=RNase P component 2 {ECO:0000256|HAMAP-Rule:MF_00755};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00755};; Pop5 {ECO:0000256|HAMAP-Rule:MF_00755}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribonuclease P protein component 2 n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WQG5_METH6
ribonuclease P protein component 2
RifSed_csp1_19ft_2_scaffold_4002_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4515..5288
DNA (774bp) protein (258aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA {ECO:0000256|HAMAP-Rule:MF_00289}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Proteasome subunit alpha, archaeal (EC:3.4.25.1)
Proteasome subunit alpha n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=PSA_METBF rbh
RifSed_csp1_19ft_2_scaffold_4002_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5295..5990
DNA (696bp) protein (232aa)
Ribosome maturation protein SBDS n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XML2_METZD rbh
rRNA metabolism protein, SBDS family {ECO:0000313|EMBL:KCZ70726.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribosome maturation protein SBDS rbh
RifSed_csp1_19ft_2_scaffold_4002_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5996..6790
DNA (795bp) protein (265aa)
Exosome complex component Rrp4 n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BTR1_METCG
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
exosome complex RNA-binding protein RRP4
RifSed_csp1_19ft_2_scaffold_4002_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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6835..7566
DNA (732bp) protein (244aa)
rrp41p; putative exosome complex exonuclease 1 (EC:3.1.13.-) rbh
Exosome complex component Rrp41 n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2Y8_UNCMA rbh
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_4002_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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7553..8338
DNA (786bp) protein (262aa)
rrp42p; exosome complex RNA-binding protein Rrp42 (EC:3.1.13.-) rbh
Exosome complex component Rrp42 n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=RRP42_UNCMA rbh
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_4002_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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8341..8643
DNA (303bp) protein (101aa)
50S ribosomal protein L37Ae n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8G3_METEZ
50S ribosomal protein L37a
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_4002_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9233..10234
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8N6_METEZ
Uncharacterized protein {ECO:0000313|EMBL:KCZ70719.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp1_19ft_2_scaffold_4002_13
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10564..11829)
DNA (1266bp) protein (422aa)
Peptidase C11 clostripain id=2643244 bin=GWF2_Geobacter_54_21 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
peptidase
Tax=GWC2_Geobacteraceae_55_20_curated
RifSed_csp1_19ft_2_scaffold_4002_14
Pelodictyon phaeoclathratiforme, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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comp(11833..12666)
DNA (834bp) protein (278aa)
Peptidase C14 caspase catalytic subunit p20 n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SAF9_PELPB rbh
peptidase C14 caspase catalytic subunit p20 rbh
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:ACF43845.1}; TaxID=324925 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;" source="Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1).;"
RifSed_csp1_19ft_2_scaffold_4002_15
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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12986..13930
DNA (945bp) protein (315aa)
Zinc metalloproteinase precursor (EC:3.4.24.29)
Extracellular protease n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2RBM3_METFO
Extracellular protease {ECO:0000313|EMBL:EKF85709.1}; TaxID=1204725 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium formicicum DSM 3637.;"
Displaying 15 items

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