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RifSed_csp1_19ft_2_scaffold_4472

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_2_scaffold_4472_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1..921
DNA (921bp) protein (307aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=SYM_METBU
RifSed_csp1_19ft_2_scaffold_4472_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(922..1761)
DNA (840bp) protein (280aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribose-phosphate pyrophosphokinase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KUV7_METHD
ribose-phosphate pyrophosphokinase
RifSed_csp1_19ft_2_scaffold_4472_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1891..3519
DNA (1629bp) protein (543aa)
ABC transporter, ATP-binding protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46EK7_METBF rbh
Methyl coenzyme M reductase system, component A2 {ECO:0000313|EMBL:KCZ72689.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Methyl coenzyme M reductase system component A2
RifSed_csp1_19ft_2_scaffold_4472_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3544..5061
DNA (1518bp) protein (506aa)
UPF0288 protein MA_3997 n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Y3997_METAC rbh
UPF0288 protein ANME2D_01119 {ECO:0000256|HAMAP-Rule:MF_01089}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein rbh
RifSed_csp1_19ft_2_scaffold_4472_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5058..5489
DNA (432bp) protein (144aa)
Methanogenesis marker protein 6 n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XME1_METZD
Putative methanogenesis marker protein 6 {ECO:0000313|EMBL:KCZ72687.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
methanogenesis marker protein 6
RifSed_csp1_19ft_2_scaffold_4472_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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5486..5938
DNA (453bp) protein (151aa)
Methanogenesis marker protein 5 n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBD5_METEZ
methanogenesis marker protein 5
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_4472_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5935..7179
DNA (1245bp) protein (415aa)
BadF/BadG/BcrA/BcrD ATPase family protein n=2 Tax=Methanosarcina mazei RepID=M1Q833_METMZ rbh
Putative methanogenesis marker protein 15 {ECO:0000313|EMBL:KCZ72685.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
BadF/BadG/BcrA/BcrD ATPase family protein rbh
RifSed_csp1_19ft_2_scaffold_4472_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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7181..7786
DNA (606bp) protein (202aa)
Methanogenesis marker protein 17 n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBD7_METEZ
methanogenesis marker protein 17
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_4472_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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7779..8705
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W8W5_UNCMA rbh
Putative methanogenesis marker protein 7 {ECO:0000313|EMBL:KCZ72683.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein rbh
RifSed_csp1_19ft_2_scaffold_4472_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8722..9978
DNA (1257bp) protein (419aa)
Glutamyl-tRNA(Gln) amidotransferase subunit D {ECO:0000256|HAMAP-Rule:MF_00586, ECO:0000256|RuleBase:RU004457}; Short=Glu-ADT subunit D {ECO:0000256|HAMAP-Rule:MF_00586};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00586, ECO:0000256|RuleBase:RU004457};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
glutamyl-tRNA(Gln) amidotransferase subunit D (EC:3.5.1.1 6.3.5.7) rbh
Glutamyl-tRNA(Gln) amidotransferase subunit D n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=GATD_METBU rbh
RifSed_csp1_19ft_2_scaffold_4472_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10175..10603)
DNA (429bp) protein (143aa)
Probable cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MEJ8_9EURY
Probable cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative molybdenum cofactor biosynthesis protein C
RifSed_csp1_19ft_2_scaffold_4472_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10643..12073)
DNA (1431bp) protein (477aa)
Carbohydrate kinase, YjeF related protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKH3_METZD rbh
YjeF-like protein, hydroxyethylthiazole kinase-related {ECO:0000313|EMBL:KCZ73267.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
carbohydrate kinase, YjeF rbh
RifSed_csp1_19ft_2_scaffold_4472_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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12242..12826
DNA (585bp) protein (195aa)
Holliday junction DNA helicase subunit RuvA {ECO:0000313|EMBL:KCZ73525.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KCZ73525.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Holliday junction DNA helicase RuvA n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LKI0_METBM
ruvA; holliday junction DNA helicase RuvA
RifSed_csp1_19ft_2_scaffold_4472_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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12830..13720
DNA (891bp) protein (297aa)
Holliday junction DNA helicase subunit RuvB {ECO:0000313|EMBL:KCZ73524.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KCZ73524.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4) rbh
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J0S854_9EURY rbh
Displaying 14 items

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