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RifSed_csp1_19ft_2_scaffold_11394

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_2_scaffold_11394_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2..1102
DNA (1101bp) protein (367aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=PUR2_METBF rbh
RifSed_csp1_19ft_2_scaffold_11394_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1103..1279)
DNA (177bp) protein (59aa)
Preprotein translocase subunit SecG n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=SECG_METTP
Preprotein translocase subunit SecG {ECO:0000256|HAMAP-Rule:MF_00751}; Protein transport protein Sec61 subunit beta homolog {ECO:0000256|HAMAP-Rule:MF_00751}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
preprotein translocase subunit SecG
RifSed_csp1_19ft_2_scaffold_11394_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1484..3235
DNA (1752bp) protein (584aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TMT4_METAC
Uncharacterized protein {ECO:0000313|EMBL:KCZ72495.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp1_19ft_2_scaffold_11394_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3276..4517)
DNA (1242bp) protein (414aa)
Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12X83_METBU rbh
Putative membrane protein {ECO:0000313|EMBL:KCZ70338.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein rbh
RifSed_csp1_19ft_2_scaffold_11394_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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4605..5519
DNA (915bp) protein (305aa)
UPI0003D1AAD6 related cluster n=1 Tax=unknown RepID=UPI0003D1AAD6 rbh
GMP synthase, glutamine-hydrolyzing, C-terminal domain or B subunit rbh
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_11394_6
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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6151..6531
DNA (381bp) protein (127aa)
Putative hydrolase of the metallo-beta-lactamase superfamily n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BE87_9EURY
putative hydrolase of the metallo-beta-lactamase superfamily
Putative hydrolase of the metallo-beta-lactamase superfamily {ECO:0000313|EMBL:AGK61333.1}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus sulfaticallidus PM70-1.;"
RifSed_csp1_19ft_2_scaffold_11394_7
Geoglobus acetivorans, Geoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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6528..7718
DNA (1191bp) protein (397aa)
Putative hydrolase of the metallo-beta-lactamase superfamily n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BE87_9EURY rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY89256.1}; TaxID=565033 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Geoglobus.;" source="Geoglobus acetivorans.;"
RifSed_csp1_19ft_2_scaffold_11394_8
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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7816..8088
DNA (273bp) protein (91aa)
Putative amidohydrolase n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EDQ3_THECK
amidohydrolase
Putative amidohydrolase {ECO:0000313|EMBL:AGA57927.1}; TaxID=717605 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermobacillus.;" source="Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4).;"
RifSed_csp1_19ft_2_scaffold_11394_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8218..9810
DNA (1593bp) protein (531aa)
AICAR transformylase/IMP cyclohydrolase PurH {ECO:0000313|EMBL:KCZ71664.1}; EC=2.1.2.3 {ECO:0000313|EMBL:KCZ71664.1};; EC=3.5.4.10 {ECO:0000313|EMBL:KCZ71664.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
IMP cyclohydrolase ;phosphoribosylaminoimidazolecarboxamide formyltransferase (EC:3.5.4.10 2.1.2.3)
IMP cyclohydrolase ;phosphoribosylaminoimidazolecarboxamide formyltransferase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E926_METMS
RifSed_csp1_19ft_2_scaffold_11394_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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9878..10147
DNA (270bp) protein (90aa)
DNA/RNA-binding protein Alba n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXS3_FERPA
DNA/RNA-binding protein Alba {ECO:0000256|HAMAP-Rule:MF_01122}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
DNA-binding protein Alba
RifSed_csp1_19ft_2_scaffold_11394_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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10230..10643
DNA (414bp) protein (138aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.-)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAL5_METCZ
RifSed_csp1_19ft_2_scaffold_11394_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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11049..11240
DNA (192bp) protein (64aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_11394_trna_1
unknown

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comp(11306..11379)
DNA (74bp)
transferRNA Val
RifSed_csp1_19ft_2_scaffold_11394_13
unknown

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comp(11651..11989)
DNA (339bp) protein (113aa)

This feature has no annotations

Displaying 14 items

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