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RifSed_csp1_19ft_2_scaffold_11728

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_2_scaffold_11728_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1..816
DNA (816bp) protein (272aa)
Putative methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; MTNA-like protein {ECO:0000256|HAMAP-Rule:MF_01678}; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
aIF-2BI family translation initiation factor (EC:5.3.1.23) rbh
Putative methylthioribose-1-phosphate isomerase n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E603_METEZ rbh
RifSed_csp1_19ft_2_scaffold_11728_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1113..1559
DNA (447bp) protein (149aa)
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:KCZ73320.1}; EC=3.6.4.13 {ECO:0000313|EMBL:KCZ73320.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ATP-dependent RNA helicase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PU01_METMA
putative ATP-dependent RNA helicase
RifSed_csp1_19ft_2_scaffold_11728_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1577..2116
DNA (540bp) protein (180aa)
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:KCZ73320.1}; EC=3.6.4.13 {ECO:0000313|EMBL:KCZ73320.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ATP-dependent RNA helicase n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1PBJ3_METMZ
putative ATP-dependent RNA helicase
RifSed_csp1_19ft_2_scaffold_11728_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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2290..2829
DNA (540bp) protein (180aa)
id=5046915 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_11728_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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2829..3239
DNA (411bp) protein (137aa)
id=5046914 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_11728_6
unknown

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3399..3659
DNA (261bp) protein (87aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_11728_7
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3656..4048
DNA (393bp) protein (131aa)
Death-on-curing family protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BX54_METCG
death-on-curing family protein
Death-on-curing family protein {ECO:0000313|EMBL:AEB68610.1}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
RifSed_csp1_19ft_2_scaffold_11728_8
unknown

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comp(4040..4171)
DNA (132bp) protein (44aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_11728_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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5015..5281
DNA (267bp) protein (89aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_11728_10
RBG_13_Lokiarchaeota_45_8_curated, Lokiarchaeota, Archaea

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5278..5682
DNA (405bp) protein (135aa)
PIN domain protein n=1 Tax=Natrinema pallidum DSM 3751 RepID=L9Z0Q2_9EURY
putative nucleic acid-binding protein, contains PIN domain
Tax=RBG_13_Lokiarchaeota_45_8_curated
RifSed_csp1_19ft_2_scaffold_11728_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5913..6329)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GI26_METTF
Uncharacterized protein {ECO:0000313|EMBL:KCZ73319.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp1_19ft_2_scaffold_11728_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6326..6796)
DNA (471bp) protein (157aa)
Nucleotidyltransferase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8THU3_METAC
Putative nucleotidyltransferase {ECO:0000313|EMBL:KCZ73318.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
nucleotidyltransferase
RifSed_csp1_19ft_2_scaffold_11728_13

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comp(7118..7594)
DNA (477bp) protein (159aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL55747.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
RifSed_csp1_19ft_2_scaffold_11728_14
unknown

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comp(7569..8090)
DNA (522bp) protein (174aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_11728_15
unknown

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comp(8200..8748)
DNA (549bp) protein (183aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_11728_16
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

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comp(8829..9152)
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BN76_HYPBU
hypothetical protein
Tax=RBG_16_Caldithrix_48_16_curated
RifSed_csp1_19ft_2_scaffold_11728_17
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

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comp(9149..9355)
DNA (207bp) protein (69aa)
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
Displaying 17 items

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