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RifSed_csp1_19ft_2_scaffold_16820

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_2_scaffold_16820_1
unknown

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1..114
DNA (114bp) protein (38aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_16820_2

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comp(111..533)
DNA (423bp) protein (141aa)
Ribonuclease H n=1 Tax=Methanoregula boonei (strain 6A8) RepID=A7I8L2_METB6
Marine sediment metagenome DNA, contig: S03H2_C00279 {ECO:0000313|EMBL:GAH29852.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ribonuclease H
RifSed_csp1_19ft_2_scaffold_16820_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(533..1108)
DNA (576bp) protein (192aa)
Kae1-associated kinase Bud32 {ECO:0000313|EMBL:KCZ72249.1}; EC=2.7.1.- {ECO:0000313|EMBL:KCZ72249.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
glycoprotease family metalloendopeptidase (EC:3.4.24.57)
Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPT4_METZD
Suspect SCG annotation. See neighboring gene [RifSed_csp1_19ft_2_scaffold_16820_4].
RifSed_csp1_19ft_2_scaffold_16820_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1099..2073)
DNA (975bp) protein (325aa)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MAC4_9EURY rbh
Metallohydrolase, glycoprotease/Kae1 family {ECO:0000313|EMBL:KCZ71999.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
gcp; putative DNA-binding/iron metalloprotein/AP endonuclease rbh
RifSed_csp1_19ft_2_scaffold_16820_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2378..2767
DNA (390bp) protein (130aa)
Serine/threonine protein kinase involved in cell cycle control {ECO:0000313|EMBL:KCZ71997.1}; EC=2.7.11.1 {ECO:0000313|EMBL:KCZ71997.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Serine/threonine protein kinase n=2 Tax=Archaea RepID=Q5NW03_9ARCH
putative serine/threonine protein kinase
RifSed_csp1_19ft_2_scaffold_16820_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2764..3303
DNA (540bp) protein (180aa)
KH domain protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNL0_METZD
KH domain protein {ECO:0000313|EMBL:KCZ71996.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative RNA-processing protein
RifSed_csp1_19ft_2_scaffold_16820_7
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3348..3854
DNA (507bp) protein (169aa)
5,6,7,8-tetrahydromethanopterin hydro-lyase; EC=4.2.1.147;; Formaldehyde-activating enzyme; Short=Fae;; TaxID=269797 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri (strain Fusaro / DSM 804).;"
Formaldehyde-activating enzyme n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=FAE_METBF
formaldehyde-activating enzyme
RifSed_csp1_19ft_2_scaffold_16820_8
BJP_IG2158_Actinobacteria_57_21, Bacteria

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comp(3930..4724)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46EI4_METBF
Biotin synthesis protein BioC
Tax=BJP_IG2158_Actinobacteria_57_21
RifSed_csp1_19ft_2_scaffold_16820_9
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4721..5782)
DNA (1062bp) protein (354aa)
Branched-chain-amino-acid aminotransferase id=4815573 bin=GWC2_Deltaproteobacteria_55_46 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
aminotransferase
Tax=RBG_16_Deltaproteobacteria_47_11_curated
RifSed_csp1_19ft_2_scaffold_16820_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5808..6443)
DNA (636bp) protein (212aa)
Ribosomal RNA adenine dimethylase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TUC4_METAC
Acetyltransferase (GNAT) family protein {ECO:0000313|EMBL:KCZ72977.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ribosomal RNA adenine dimethylase
RifSed_csp1_19ft_2_scaffold_16820_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6559..7011
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9P6_METEZ
Uncharacterized protein {ECO:0000313|EMBL:KCZ73543.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp1_19ft_2_scaffold_16820_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7037..7474
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U3K4_9CHLR
Deazaflavin-dependent nitroreductase family protein {ECO:0000313|EMBL:KCZ70688.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp1_19ft_2_scaffold_16820_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7458..7922)
DNA (465bp) protein (155aa)
Abortive infection protein n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I0R3_DESAP
CAAX amino terminal protease family {ECO:0000313|EMBL:KCZ71109.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
abortive infection protein
Displaying 13 items

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