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RifSed_csp1_19ft_2_scaffold_34650

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_2_scaffold_34650_1
Methanosarcina sp. Kolksee, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2..475)
DNA (474bp) protein (158aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZM4_METHD
Methionine ABC transporter ATP-binding protein
Methionine ABC transporter ATP-binding protein {ECO:0000313|EMBL:AKB46511.1}; TaxID=1434099 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. Kolksee.;"
RifSed_csp1_19ft_2_scaffold_34650_trna_1
unknown

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589..662
DNA (74bp)
transferRNA Val
RifSed_csp1_19ft_2_scaffold_34650_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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610..1353
DNA (744bp) protein (248aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Archaeosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
7-cyano-7-deazaguanine synthase n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YWF0_METPS
queC; archaeosine biosynthesis protein QueC
RifSed_csp1_19ft_2_scaffold_34650_3
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1361..1768)
DNA (408bp) protein (136aa)
UPI0003D1A40B related cluster n=1 Tax=unknown RepID=UPI0003D1A40B
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp1_19ft_2_scaffold_34650_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1761..1916)
DNA (156bp) protein (52aa)
Multimeric flavodoxin WrbA {ECO:0000313|EMBL:KCZ72906.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_34650_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1922..2326)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46B08_METBF
Nucleoside 2-deoxyribosyltransferase {ECO:0000313|EMBL:KCZ72905.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Nucleoside 2-deoxyribosyltransferase
RifSed_csp1_19ft_2_scaffold_34650_6
unknown

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comp(2426..3211)
DNA (786bp) protein (262aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_34650_7
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3192..3581)
DNA (390bp) protein (130aa)
Transcriptional regulator, ArsR family n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46BT1_METBF
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:AKB12662.1}; TaxID=523844 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina thermophila TM-1.;"
Transcriptional regulator, ArsR family
RifSed_csp1_19ft_2_scaffold_34650_8
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3692..3880
DNA (189bp) protein (63aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp1_19ft_2_scaffold_34650_9
unknown

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comp(4220..4393)
DNA (174bp) protein (58aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_34650_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4393..4749)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D529_METSW
Uncharacterized protein {ECO:0000313|EMBL:KCZ71412.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp1_19ft_2_scaffold_34650_11
unknown

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comp(4759..4956)
DNA (198bp) protein (66aa)

This feature has no annotations

Displaying 12 items

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