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RifSed_csp1_13ft_1_scaffold_4374

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_13ft_1_scaffold_4374_1
Planktothrix agardhii, Planktothrix, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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1..885
DNA (885bp) protein (295aa)
Binding-protein-dependent transport systems inner membrane component Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AS04_RUBXD
PotB {ECO:0000313|EMBL:KEI65914.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Planktothrix.;" source="Planktothrix agardhii NIVA-CYA 126/8.;"
binding-protein-dependent transport systems inner membrane component
RifSed_csp1_13ft_1_scaffold_4374_2
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

882..1667
DNA (786bp) protein (262aa)
ABC-type spermidine/putrescine transport system, permease component II Tax=Phyllobacterium sp. YR531 RepID=J3HTX5_9RHIZ
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:EJN05458.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
binding-protein-dependent transport system inner membrane protein
RifSed_csp1_13ft_1_scaffold_4374_3
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(1654..2751)
DNA (1098bp) protein (366aa)
putrescine ABC transporter ATP-binding protein; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31] bin=bin8_Chloro species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
spermidine/putrescine ABC transporter ATP-binding protein
Tax=RBG_16_RIF_CHLX_69_14_curated
RifSed_csp1_13ft_1_scaffold_4374_4
Carnobacterium sp. 17-4, Carnobacterium, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2753..3133)
DNA (381bp) protein (127aa)
Spermidine/putrescine ABC transporter, substrate binding lipoprotein Tax=Carnobacterium sp. (strain 17-4) RepID=F4BMW5_CARS1
potD; spermidine/putrescine ABC transporter substrate binding lipoprotein
Spermidine/putrescine ABC transporter, substrate binding lipoprotein {ECO:0000313|EMBL:AEB30511.1}; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.;" source="Carnobacterium sp. (strain 17-4).;"
RifSed_csp1_13ft_1_scaffold_4374_5
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3144..3983)
DNA (840bp) protein (280aa)
Putrescine-binding periplasmic protein Tax=Ochrobactrum sp. CDB2 RepID=M3KAJ8_9RHIZ
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
extracellular solute-binding protein
RifSed_csp1_13ft_1_scaffold_4374_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

4048..5298
DNA (1251bp) protein (417aa)
Saccharopine dehydrogenase Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HS96_CYAP4
saccharopine dehydrogenase
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_1_scaffold_4374_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(5321..6769)
DNA (1449bp) protein (483aa)
Aminotransferase class III Tax=haloarchaeon 3A1_DGR RepID=T0TY43_9EURY
glutamate-1-semialdehyde aminotransferase
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_1_scaffold_4374_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(7114..8145)
DNA (1032bp) protein (344aa)
saccharopine dehydrogenase (NAD+, L-lysine forming) (EC:1.5.1.7)
Saccharopine dehydrogenase (NAD+, L-lysine forming) Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N766_9ARCH
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_1_scaffold_4374_9
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8468..9835)
DNA (1368bp) protein (456aa)
Aldehyde Dehydrogenase Tax=Haladaptatus paucihalophilus DX253 RepID=E7QX55_9EURY
Aldehyde Dehydrogenase {ECO:0000313|EMBL:EFW90858.1}; species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophilus DX253.;"
aldehyde dehydrogenase
RifSed_csp1_13ft_1_scaffold_4374_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(9990..10256)
DNA (267bp) protein (89aa)
RelE/StbE family addiction module toxin protein Tax=Streptomyces sp. W007 RepID=H0BAQ7_9ACTO
RelE/StbE family addiction module toxin
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_1_scaffold_4374_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(10262..10489)
DNA (228bp) protein (76aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_13ft_1_scaffold_4374_12
Halorubrum terrestre, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10737..11897
DNA (1161bp) protein (387aa)
nonspecific lipid-transfer protein (sterol carrier protein) (EC:2.3.1.176)
Nonspecific lipid-transfer protein (Sterol carrier protein) Tax=Halorubrum terrestre JCM 10247 RepID=M0CZA8_9EURY
Nonspecific lipid-transfer protein (Sterol carrier protein) {ECO:0000313|EMBL:ELZ28556.1}; species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum terrestre JCM 10247.;"
RifSed_csp1_13ft_1_scaffold_4374_13
unknown

Not on your lists

12061..12225
DNA (165bp) protein (55aa)

This feature has no annotations

RifSed_csp1_13ft_1_scaffold_4374_14
unknown

Not on your lists

12479..12667
DNA (189bp) protein (63aa)

This feature has no annotations

RifSed_csp1_13ft_1_scaffold_4374_15
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12693..12881)
DNA (189bp) protein (63aa)
Uncharacterized protein Tax=Methanosarcina mazei Tuc01 RepID=M1Q6N5_METMZ
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF97955.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei Tuc01.;"
RifSed_csp1_13ft_1_scaffold_4374_16
Aeropyrum pernix, Aeropyrum, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

13486..14082
DNA (597bp) protein (199aa)
adh; NAD-dependent alcohol dehydrogenase (EC:1.1.1.1)
NAD-dependent alcohol dehydrogenase {ECO:0000313|EMBL:BAA81251.2}; EC=1.1.1.1 {ECO:0000313|EMBL:BAA81251.2};; species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum.;" source="Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC; 100138 / K1).;"
NAD-dependent alcohol dehydrogenase Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=Q9Y9P9_AERPE
RifSed_csp1_13ft_1_scaffold_4374_17
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(14100..14834)
DNA (735bp) protein (245aa)
Isoprenylcysteine carboxyl methyltransferase bin=GWA2_OP3_52_12 species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Isoprenylcysteine carboxyl methyltransferase
Tax=RBG_16_Archaea_50_20_curated
RifSed_csp1_13ft_1_scaffold_4374_18
unknown

Not on your lists

comp(14904..15173)
DNA (270bp) protein (90aa)

This feature has no annotations

RifSed_csp1_13ft_1_scaffold_4374_19
unknown

Not on your lists

comp(15170..15937)
DNA (768bp) protein (256aa)

This feature has no annotations

RifSed_csp1_13ft_1_scaffold_4374_20
unknown

Not on your lists

comp(15934..16152)
DNA (219bp) protein (73aa)

This feature has no annotations

RifSed_csp1_13ft_1_scaffold_4374_21
uncultured ammonia-oxidizing beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16152..16853)
DNA (702bp) protein (234aa)
Ammonia monooxygenase subunit A (Fragment) Tax=uncultured ammonia-oxidizing beta proteobacterium RepID=A3F8L7_9PROT
Ammonia monooxygenase subunit A {ECO:0000313|EMBL:ABN13033.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured ammonia-oxidizing beta proteobacterium.;"
methane monooxygenase/ammonia monooxygenase subunit A
RifSed_csp1_13ft_1_scaffold_4374_22
unknown

Not on your lists

comp(16868..17437)
DNA (570bp) protein (190aa)

This feature has no annotations

RifSed_csp1_13ft_1_scaffold_4374_23
Rhodococcus sp. AW25M09, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17928..18194)
DNA (267bp) protein (89aa)
mannose-6-phosphate isomerase Tax=Burkholderia kururiensis RepID=UPI00034A76DD
cupin
Uncharacterized protein {ECO:0000313|EMBL:CCQ17508.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AW25M09.;"
RifSed_csp1_13ft_1_scaffold_4374_24
unknown

Not on your lists

18513..19190
DNA (678bp) protein (226aa)

This feature has no annotations

RifSed_csp1_13ft_1_scaffold_4374_25
Aeropyrum pernix, Aeropyrum, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(19239..20024)
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=Q9Y9P6_AERPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAA81254.2}; species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum.;" source="Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC; 100138 / K1).;"
RifSed_csp1_13ft_1_scaffold_4374_26
Aeropyrum pernix, Aeropyrum, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(20121..20396)
DNA (276bp) protein (92aa)
Putative amidohydrolase Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=Q9Y9P8_AERPE
amidohydrolase
Uncharacterized protein {ECO:0000313|EMBL:BAA81252.1}; species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum.;" source="Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC; 100138 / K1).;"
Displaying 26 items

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