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RifSed_csp1_19ft_3_scaffold_2955

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Displaying 25 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_3_scaffold_2955_1
unknown

Not on your lists

2..211
DNA (210bp) protein (70aa)

This feature has no annotations

RifSed_csp1_19ft_3_scaffold_2955_2
unknown

Not on your lists

comp(338..691)
DNA (354bp) protein (118aa)

This feature has no annotations

RifSed_csp1_19ft_3_scaffold_2955_3
unknown

Not on your lists

1056..1211
DNA (156bp) protein (52aa)

This feature has no annotations

RifSed_csp1_19ft_3_scaffold_2955_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(1220..2110)
DNA (891bp) protein (297aa)
Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit Tax=mine drainage metagenome RepID=T0ZU80_9ZZZZ
pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_3_scaffold_2955_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(2107..3861)
DNA (1755bp) protein (585aa)
pyruvate ferredoxin oxidoreductase, alpha chain (EC:1.2.7.1)
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein Tax=mine drainage metagenome RepID=T0ZDM1_9ZZZZ
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_2955_6
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

4043..4834
DNA (792bp) protein (264aa)
Short-chain dehydrogenase/reductase bin=GWD2_Deltaproteobacteria_55_8 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
short-chain dehydrogenase/reductase SDR
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_3_scaffold_2955_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

4891..5292
DNA (402bp) protein (134aa)
hypothetical protein Tax=Desulfobacter curvatus RepID=UPI000360B13D
endoribonuclease L-PSP
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_2955_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(5314..5496)
DNA (183bp) protein (61aa)
AsnC family transcriptional regulator Tax=Methanomassiliicoccus luminyensis RepID=UPI0003794C7E
transcriptional regulator
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_2955_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

5979..7037
DNA (1059bp) protein (353aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI000377EE64
glutamine amidotransferase subunit PdxT
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_2955_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(7034..8863)
DNA (1830bp) protein (610aa)
Uncharacterized protein Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W080_UNCMA
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_2955_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8875..9612)
DNA (738bp) protein (246aa)
geranylgeranylglyceryl phosphate synthase (EC:2.5.1.41)
Geranylgeranylglyceryl phosphate synthase Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5I9F2_ACIB4
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_2955_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(9609..10442)
DNA (834bp) protein (278aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00037B9578
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_3_scaffold_2955_13
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10491..11615)
DNA (1125bp) protein (375aa)
Transglutaminase domain protein Tax=Clostridium carboxidivorans P7 RepID=C6PXL4_9CLOT
transglutaminase domain protein
Transglutaminase domain protein {ECO:0000313|EMBL:AKA68182.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
RifSed_csp1_19ft_3_scaffold_2955_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(11594..13243)
DNA (1650bp) protein (550aa)
Alpha-L-glutamate ligase Tax=Haloarcula japonica DSM 6131 RepID=M0LCI6_HALJP
alpha-L-glutamate ligase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_3_scaffold_2955_15
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

13367..13978
DNA (612bp) protein (204aa)
Methyltransferase small domain protein Tax=Streptococcus parasanguinis ATCC 903 RepID=E8K581_STRPA
methyltransferase domain-containing protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_3_scaffold_2955_16
RBG_16_Euryarchaeota_62_10_curated, Euryarchaeota, Archaea

Not on your lists

comp(13973..14596)
DNA (624bp) protein (208aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI0003706DCB
transcriptional regulator, ArsR family
Tax=RBG_16_Euryarchaeota_62_10_curated
RifSed_csp1_19ft_3_scaffold_2955_17
RBG_16_Euryarchaeota_62_10_curated, Euryarchaeota, Archaea

Not on your lists

comp(14616..16373)
DNA (1758bp) protein (586aa)
rci:RCIX2726 hypothetical protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Euryarchaeota_62_10_curated
RifSed_csp1_19ft_3_scaffold_2955_18
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


16519..17124
DNA (606bp) protein (202aa)
30S ribosomal protein S13 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036DF005
rps13p; 30S ribosomal protein S13
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_3_scaffold_2955_19
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


17129..17734
DNA (606bp) protein (202aa)
30S ribosomal protein S4 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T9R9_9EURY
rps4p; 30S ribosomal protein S4P
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_3_scaffold_2955_20
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


17731..18114
DNA (384bp) protein (128aa)
30S ribosomal protein S11 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037DC102
rps11p; 30S ribosomal protein S11P
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_2955_21
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

18114..18950
DNA (837bp) protein (279aa)
DNA-directed RNA polymerase subunit D (EC:2.7.7.6)
DNA-directed RNA polymerase subunit D Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5Y4_9EURY
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_2955_22
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

19021..19431
DNA (411bp) protein (137aa)
hypothetical protein Tax=Aigarchaeota archaeon JGI 0000001-H6 RepID=UPI00035C9A05
putative manganese-dependent inorganic pyrophosphatase
Tax=RBG_16_Bathyarchaeota_48_13_curated
RifSed_csp1_19ft_3_scaffold_2955_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

19456..19845
DNA (390bp) protein (130aa)
blaI; penicillinase repressor
blaI; penicillinase repressor; K07737 putative transcriptional regulator bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_2955_24
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

19829..20749
DNA (921bp) protein (307aa)
M56 family unassigned peptidase bin=RBG_16_Aminicenantes_63_14 species=Paenibacillus daejeonensis genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
peptidase M56 BlaR1
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_2955_25
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

20846..21610
DNA (765bp) protein (255aa)
Uncharacterized protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QG77_9CYAN
hypothetical protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Displaying 25 items

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