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RifSed_csp1_19ft_4_scaffold_2129

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Displaying items 1-30 of 36 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_4_scaffold_2129_1
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..905)
DNA (903bp) protein (301aa)
Transcriptional activator domain protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THF8_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:ETK35903.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
RifSed_csp1_19ft_4_scaffold_2129_2
RBG_13_Chloroflexi_54_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(850..2688)
DNA (1839bp) protein (613aa)
serine/threonine protein kinase (EC:2.7.11.1); K00870 protein kinase [EC:2.7.1.37] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
serine/threonine protein kinase
Tax=RBG_13_Chloroflexi_54_8_curated
RifSed_csp1_19ft_4_scaffold_2129_trna_1
unknown

Not on your lists

comp(2773..2847)
DNA (75bp)
transferRNA Pro
RifSed_csp1_19ft_4_scaffold_2129_3
GWA2_RIF01_43_8_curated, RIF1, Bacteria

Not on your lists

comp(2943..4133)
DNA (1191bp) protein (397aa)
Aminomethyltransferase Tax=bacterium symbiont of Plakortis simplex pPS11G3 RepID=V5JAF1_9BACT
Glycine cleavage system T protein (aminomethyltransferase)
Tax=GWA2_RIF01_43_8_curated
RifSed_csp1_19ft_4_scaffold_2129_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(4263..4514)
DNA (252bp) protein (84aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_4_scaffold_2129_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

4672..5352
DNA (681bp) protein (227aa)
XRE family transcriptional regulator Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T869_9EURY
XRE family transcriptional regulator
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_4_scaffold_2129_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

5349..6404
DNA (1056bp) protein (352aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI0003780C81
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_4_scaffold_2129_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

6404..7573
DNA (1170bp) protein (390aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI000375FAC5
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_4_scaffold_2129_8
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

7575..7976
DNA (402bp) protein (134aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00037FE05A
hypothetical protein
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_4_scaffold_2129_9
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

Not on your lists

comp(8005..8460)
DNA (456bp) protein (152aa)
id=1249807 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
RifSed_csp1_19ft_4_scaffold_2129_10
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8482..9132)
DNA (651bp) protein (217aa)
ABC branched-chain amino acid transporter family, ATPase subunit Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JLZ7_9RHOB
Branched-chain amino acid ABC transporter ATPase {ECO:0000313|EMBL:KIX19533.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361.;"
branched-chain amino acid ABC transporter ATP-binding protein
RifSed_csp1_19ft_4_scaffold_2129_11
Pyrolobus fumarii, Pyrolobus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(9206..9937)
DNA (732bp) protein (244aa)
hypothetical protein Tax=unclassified candidate division pSL4 RepID=UPI0003827D6B
ABC transporter-like protein
ABC transporter-related protein {ECO:0000313|EMBL:AEM38595.1}; species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Pyrodictiaceae; Pyrolobus.;" source="Pyrolobus fumarii (strain DSM 11204 / 1A).;"
RifSed_csp1_19ft_4_scaffold_2129_12
Hyperthermus butylicus, Hyperthermus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(9990..11276)
DNA (1287bp) protein (429aa)
hypothetical protein Tax=Aigarchaeota archaeon SCGC AAA471-G05 RepID=UPI00035D6261
ABC-type branched-chain amino acid transport, periplasmic component
ABC-type branched-chain amino acid transport, periplasmic component {ECO:0000313|EMBL:ABM80474.1}; species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Pyrodictiaceae; Hyperthermus.;" source="Hyperthermus butylicus (strain DSM 5456 / JCM 9403).;"
RifSed_csp1_19ft_4_scaffold_2129_13
Thermofilum pendens, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(11319..12407)
DNA (1089bp) protein (363aa)
hypothetical protein Tax=Aigarchaeota archaeon SCGC AAA471-G05 RepID=UPI0003730461
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ABL78973.1}; species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.;" source="Thermofilum pendens (strain Hrk 5).;"
RifSed_csp1_19ft_4_scaffold_2129_14
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(12409..13368)
DNA (960bp) protein (320aa)
hypothetical protein Tax=unclassified candidate division pSL4 RepID=UPI000364631C
ABC transporter permease
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEF95939.1}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris.;" source="Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5).;"
RifSed_csp1_19ft_4_scaffold_2129_15
Mycobacterium avium, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13523..14041
DNA (519bp) protein (173aa)
O-methyltransferase Tax=Mycobacterium avium subsp. hominissuis 10-4249 RepID=V7MGX5_MYCAV
O-methyltransferase {ECO:0000313|EMBL:KDO92727.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium avium subsp. hominissuis A5.;"
methyltransferase
RifSed_csp1_19ft_4_scaffold_2129_16
bacterium YEK0313, Bacteria

Not on your lists

comp(14325..14504)
DNA (180bp) protein (60aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; species="Bacteria.;" source="bacterium YEK0313.;"
alkylhydroperoxidase Tax=Rhizobium loti RepID=UPI00037C38E4
alkylhydroperoxidase AhpD family core domain
RifSed_csp1_19ft_4_scaffold_2129_17
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

14615..14917
DNA (303bp) protein (101aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00037FE05A
hypothetical protein
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_4_scaffold_2129_18
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15245..15541
DNA (297bp) protein (99aa)
Uncharacterized protein Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6KRK0_STRRC
Uncharacterized protein {ECO:0000313|EMBL:EST34785.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
RifSed_csp1_19ft_4_scaffold_2129_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

15683..16207
DNA (525bp) protein (175aa)
MOSC domain containing protein bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
MOSC domain-containing protein
Tax=RBG_16_Archaea_50_20_curated
RifSed_csp1_19ft_4_scaffold_2129_20
unknown

Not on your lists

comp(16235..16684)
DNA (450bp) protein (150aa)

This feature has no annotations

RifSed_csp1_19ft_4_scaffold_2129_21
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

16796..17365
DNA (570bp) protein (190aa)
Tax=RBG_16_Euryarchaeota_68_13_curated
RifSed_csp1_19ft_4_scaffold_2129_22
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

17493..17657
DNA (165bp) protein (55aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_4_scaffold_2129_23
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

17662..17994
DNA (333bp) protein (111aa)
id=4744551 bin=GWC2_OP3_44_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_4_scaffold_2129_24
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(18119..19924)
DNA (1806bp) protein (602aa)
ABC transporter; K06158 ATP-binding cassette, subfamily F, member 3 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC transporter ATP-binding protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_4_scaffold_2129_25
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20026..20607)
DNA (582bp) protein (194aa)
Uncharacterized protein Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RRA5_BLASD
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_66_13_curated
RifSed_csp1_19ft_4_scaffold_2129_26
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

20850..21209
DNA (360bp) protein (120aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_4_scaffold_2129_27
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

21206..21823
DNA (618bp) protein (206aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_4_scaffold_2129_28
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

21992..22684
DNA (693bp) protein (231aa)
SOS response transcriptional repressor, RecA-mediated autopeptidase {ECO:0000313|EMBL:KCZ72930.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Alkylmercury lyase family protein bin=GWC2_Methylomirabilis_70_16 species=Rhodococcus opacus genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RifSed_csp1_19ft_4_scaffold_2129_29
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(22853..24823)
DNA (1971bp) protein (657aa)
Peptidase S8 and S53 subtilisin kexin sedolisin Tax=Oscillochloris trichoides DG-6 RepID=E1IC59_9CHLR
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:EFO81249.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
peptidase S8/S53 subtilisin kexin sedolisin
Displaying items 1-30 of 36 in total

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