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400_zone1_2014_Ig3401_scaffold_111

Search features with annotation key words

Displaying items 31-60 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
400_zone1_2014_Ig3401_scaffold_111_29
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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24694..25980
-----------------
DNA (1287bp)
protein (429aa)
5-Enolpyruvylshikimate-3-phosphate synthase (EC:2.5.1.19) Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037B26C2 rbh
3-phosphoshikimate 1-carboxyvinyltransferase
400_zone1_2014_Ig3401_scaffold_111_30
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26198..26476
-----------------
DNA (279bp)
protein (93aa)
Response regulator receiver protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PMW8_9CLOT
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:EET89546.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivo
400_zone1_2014_Ig3401_scaffold_111_31
Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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26479..26841
-----------------
DNA (363bp)
protein (121aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XL03_CALS8
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADQ40943.1}; TaxID=632335 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Famil
400_zone1_2014_Ig3401_scaffold_111_32
RIFOXYD2_FULL_Elusimicrobia_34_30_curated, Elusimicrobia, Bacteria

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26874..28793
-----------------
DNA (1920bp)
protein (640aa)
sporulation kinase (EC:2.7.3.-) Tax=RIFOXYD2_FULL_Elusimicrobia_34_30_curated
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B408BF
PAS/PAC sensor signal transduction histidine kinase
400_zone1_2014_Ig3401_scaffold_111_33
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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28918..30027
-----------------
DNA (1110bp)
protein (370aa)
Chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
Chorismate synthase n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XM82_METZD
400_zone1_2014_Ig3401_scaffold_111_34

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30040..30918
-----------------
DNA (879bp)
protein (293aa)
Shikimate kinase n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VSZ5_9EURY
Marine sediment metagenome DNA, contig: S01H4_S12219 {ECO:0000313|EMBL:GAG92060.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
shikimate kinase
400_zone1_2014_Ig3401_scaffold_111_35
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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30915..31703
-----------------
DNA (789bp)
protein (263aa)
Uncharacterized protein n=2 Tax=Methanosarcina mazei RepID=M1PB30_METMZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB65520.1}; TaxID=213585 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina ma
400_zone1_2014_Ig3401_scaffold_111_36
Pyrococcus abyssi, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(31711..32007)
-----------------
DNA (297bp)
protein (99aa)
Uncharacterized protein n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Q9V008_PYRAB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAB49898.1}; TaxID=272844 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus abyssi (strain GE5 /
400_zone1_2014_Ig3401_scaffold_111_37

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comp(32004..32414)
-----------------
DNA (411bp)
protein (137aa)
Translation initiation factor 2 subunit beta n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D5D2_METSW
Marine sediment metagenome DNA, contig: S01H4_S07706 {ECO:0000313|EMBL:GAH01325.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
translation initiation factor 2 subunit beta
400_zone1_2014_Ig3401_scaffold_111_38

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comp(32419..33153)
-----------------
DNA (735bp)
protein (245aa)
Uncharacterized protein conserved in archaea id=5040619 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Uncharacterized protein {ECO:0000313|EMBL:KHO47729.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
OB-fold tRNA/helicase-type nucleic acid binding protein
400_zone1_2014_Ig3401_scaffold_111_39

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33177..33746
-----------------
DNA (570bp)
protein (190aa)
Putative uncharacterized protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D2I0_METSW
Marine sediment metagenome DNA, contig: S06H3_C00622 {ECO:0000313|EMBL:GAI00636.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
400_zone1_2014_Ig3401_scaffold_111_40

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comp(33709..34035)
-----------------
DNA (327bp)
protein (109aa)
Marine sediment metagenome DNA, contig: S06H3_C00622 {ECO:0000313|EMBL:GAI00634.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
400_zone1_2014_Ig3401_scaffold_111_41

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comp(34032..35201)
-----------------
DNA (1170bp)
protein (390aa)
UPI0003D1B61B related cluster n=1 Tax=unknown RepID=UPI0003D1B61B
Marine sediment metagenome DNA, contig: S06H3_C00622 {ECO:0000313|EMBL:GAI00631.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
potassium channel protein
400_zone1_2014_Ig3401_scaffold_111_42
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(35206..35763)
-----------------
DNA (558bp)
protein (186aa)
Predicted transporter protein n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PYQ8_METTM
transporter protein
Tax=BJP_IG2158_Thermoplasmatales_53_16
400_zone1_2014_Ig3401_scaffold_111_43

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comp(35768..36325)
-----------------
DNA (558bp)
protein (186aa)
Cation transporter n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TAW4_9EURY
Marine sediment metagenome DNA, contig: S06H3_C02867 {ECO:0000313|EMBL:GAH97019.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
MgtE integral membrane protein
400_zone1_2014_Ig3401_scaffold_111_44
unknown

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36464..36646
-----------------
DNA (183bp)
protein (61aa)

This feature has no annotations

400_zone1_2014_Ig3401_scaffold_111_45
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(36730..37539)
-----------------
DNA (810bp)
protein (270aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; TaxID=259564 species="A
Tryptophan synthase alpha chain n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12ZJ9_METBU
400_zone1_2014_Ig3401_scaffold_111_46
Aquifex aeolicus, Aquifex, Aquificales, Aquificae, Aquificae, Bacteria

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comp(37536..38723)
-----------------
DNA (1188bp)
protein (396aa)
trpB1; tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain 1; EC=4.2.1.20;; TaxID=224324 species="Bacteria; Aquificae; Aquificales; Aquificaceae; Aquifex.;" source="Aquifex aeolicus (strain VF5).;"
Tryptophan synthase beta chain 1 n=1 Tax=Aquifex aeolicus (strain VF5) RepID=TRPB1_AQUAE
400_zone1_2014_Ig3401_scaffold_111_47

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comp(38723..39373)
-----------------
DNA (651bp)
protein (217aa)
trpF; N-(5'-phosphoribosyl)anthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) RepID=I3R7D9_HALMT
Marine sediment metagenome DNA, contig: S01H4_S12534 {ECO:0000313|EMBL:GAG95831.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
400_zone1_2014_Ig3401_scaffold_111_48
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(39378..40148)
-----------------
DNA (771bp)
protein (257aa)
indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] id=15192715 bin=GWC2_NOV_55_46 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_NOV_55_46 organism_group=Proteobacteria
indole-3-glycerol-phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase Tax=S_Thermoanaerobacterales_50_218
400_zone1_2014_Ig3401_scaffold_111_49
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(40145..41200)
-----------------
DNA (1056bp)
protein (352aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211};; TaxID=880724 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; M
Anthranilate phosphoribosyltransferase n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD09_METIK rbh
anthranilate phosphoribosyltransferase
400_zone1_2014_Ig3401_scaffold_111_50
GWA2_WOR_2_45_18_curated, WOR-2, Bacteria

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comp(41197..41778)
-----------------
DNA (582bp)
protein (194aa)
trpG; anthranilate synthase component II; K01658 anthranilate synthase component II [EC:4.1.3.27] Tax=GWA2_WOR_2_45_18_curated
Fragment of Anthranilate synthase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFE7_9BACT
anthranilate synthase component II
400_zone1_2014_Ig3401_scaffold_111_51
CG_Arma_02, Armatimonadetes, Bacteria

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comp(41779..43224)
-----------------
DNA (1446bp)
protein (482aa)
anthranilate synthase, component I (EC:4.1.3.27) Tax=CG_Arma_02
trpE; anthranilate synthase, component I (EC:4.1.3.27)
Anthranilate synthase, component I n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W626_UNCMA
400_zone1_2014_Ig3401_scaffold_111_52
unknown

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43387..43671
-----------------
DNA (285bp)
protein (95aa)

This feature has no annotations

400_zone1_2014_Ig3401_scaffold_111_53
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

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comp(43729..45279)
-----------------
DNA (1551bp)
protein (517aa)
(R)-citramalate synthase (EC:2.3.3.13)
Probable 2-isopropylmalate synthase; EC=2.3.3.13;; Alpha-IPM synthase; Alpha-isopropylmalate synthase; TaxID=190192 species="Archaea; Euryarchaeota; Methanopyri; Methanopyrales; Methanopyraceae; Metha
Probable 2-isopropylmalate synthase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=LEU1_METKA rbh
400_zone1_2014_Ig3401_scaffold_111_54

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45350..46849
-----------------
DNA (1500bp)
protein (500aa)
cimA; (R)-citramalate synthase (EC:2.3.3.-)
Putative (R)-citramalate synthase CimA n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PWW5_METTM
Marine sediment metagenome DNA, contig: S06H3_C00611 {ECO:0000313|EMBL:GAI00496.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
400_zone1_2014_Ig3401_scaffold_111_55
CG_Woesearch_01, Woesearchaeota, Archaea

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46849..47148
-----------------
DNA (300bp)
protein (100aa)
Translation initiation factor 1A n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=IF1A_METJA
translation initiation factor IF-1; K03236 translation initiation factor 1A Tax=CG_Woesearch_01
translation initiation factor IF-1
400_zone1_2014_Ig3401_scaffold_111_56
Thermococcus kodakarensis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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47161..47940
-----------------
DNA (780bp)
protein (260aa)
Serine/threonine protein kinase Rio1p homolog n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=Q5JH79_THEKO
serine/threonine protein kinase
Serine/threonine protein kinase Rio1p homolog {ECO:0000313|EMBL:BAD84990.1}; TaxID=69014 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermoco
400_zone1_2014_Ig3401_scaffold_111_57

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47976..48899
-----------------
DNA (924bp)
protein (308aa)
Branched-chain amino acid aminotransferase n=1 Tax=Azoarcus sp. KH32C RepID=H0PY24_9RHOO
Marine sediment metagenome DNA, contig: S06H3_C00049 {ECO:0000313|EMBL:GAH92355.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
ilvE; branched-chain amino acid aminotransferase
400_zone1_2014_Ig3401_scaffold_111_58
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(48925..51066)
-----------------
DNA (2142bp)
protein (714aa)
Glycoside hydrolase family 5 n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SDY6_RHOMR
glycoside hydrolase family protein
Glycoside hydrolase family 5 {ECO:0000313|EMBL:AEN71978.1}; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" s
Displaying items 31-60 of 62 in total

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